Literature DB >> 9520507

Spectrum: spectral analysis of phylogenetic data.

M A Charleston1.   

Abstract

MOTIVATION: Spectrum is a new Macintosh and Microsoft Windows program designed to read in phylogenetic four-state or binary data in NEXUS format, and output the corresponding bipartition spectra. It can be used to find the tree whose expected spectrum is closest to the observed spectrum (the closest tree, Hendy, Discr, Math., 96, 51-58,. 1991).

Mesh：

Year:  1998        PMID： 9520507     DOI： 10.1093/bioinformatics/14.1.98

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Unravelling a biogeographical knot: origin of the 'leapfrog' distribution pattern of Australo-Papuan sooty owls (Strigiformes) and logrunners (Passeriformes).

Authors:  J A Norman; L Christidis; L Joseph; B Slikas; D Alpers
Journal:  Proc Biol Sci       Date:  2002-10-22       Impact factor: 5.349

2.  Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins.

Authors:  R P Hirt; J M Logsdon; B Healy; M W Dorey; W F Doolittle; T M Embley
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-19       Impact factor: 11.205

3.  The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus.

Authors:  J J Hanger; L D Bromham; J J McKee; T M O'Brien; W F Robinson
Journal:  J Virol       Date:  2000-05       Impact factor: 5.103

4.  An intuitive, informative, and most balanced representation of phylogenetic topologies.

Authors:  Wataru Iwasaki; Toshihisa Takagi
Journal:  Syst Biol       Date:  2010-09-03       Impact factor: 15.683

5.  A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.

Authors:  David A Fitzpatrick; Mary E Logue; Jason E Stajich; Geraldine Butler
Journal:  BMC Evol Biol       Date:  2006-11-22       Impact factor: 3.260

6.  New Methods to Calculate Concordance Factors for Phylogenomic Datasets.

Authors:  Bui Quang Minh; Matthew W Hahn; Robert Lanfear
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

7.  Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects.

Authors:  Johann Wolfgang Wägele; Christoph Mayer
Journal:  BMC Evol Biol       Date:  2007-08-28       Impact factor: 3.260

8.  Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis.

Authors:  David A Fitzpatrick; Mary E Logue; Geraldine Butler
Journal:  BMC Evol Biol       Date:  2008-06-24       Impact factor: 3.260
  8 in total

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