Literature DB >> 9518476

The protein splicing domain of the homing endonuclease PI-sceI is responsible for specific DNA binding.

W Grindl1, W Wende, V Pingoud, A Pingoud.   

Abstract

The homing endonuclease PI- Sce I consists of a protein splicing domain (I) and an endonucleolytic domain (II). To characterize the two domains with respect to their contribution to DNA recognition we cloned, purified and characterized the isolated domains. Both domains have no detectable endonucleolytic activity. Domain I binds specifically to the PI- Sce I recognition sequence, whereas domain II displays only weak non-specific DNA binding. In the specific complex with domain I the DNA is bent to a similar extent as observed with the initial complex formed between PI- Sce I and DNA. Our results indicate that protein splicing domain I is also involved in recognition of the DNA substrate.

Mesh:

Substances:

Year:  1998        PMID: 9518476      PMCID: PMC147489          DOI: 10.1093/nar/26.8.1857

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Modular organization of inteins and C-terminal autocatalytic domains.

Authors:  S Pietrokovski
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

2.  Functional domains in Fok I restriction endonuclease.

Authors:  L Li; L P Wu; S Chandrasegaran
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-15       Impact factor: 11.205

3.  Protein splicing elements: inteins and exteins--a definition of terms and recommended nomenclature.

Authors:  F B Perler; E O Davis; G E Dean; F S Gimble; W E Jack; N Neff; C J Noren; J Thorner; M Belfort
Journal:  Nucleic Acids Res       Date:  1994-04-11       Impact factor: 16.971

4.  Prediction of protein secondary structure at better than 70% accuracy.

Authors:  B Rost; C Sander
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

Review 5.  Introns as mobile genetic elements.

Authors:  A M Lambowitz; M Belfort
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

6.  Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector.

Authors:  J Kim; C Zwieb; C Wu; S Adhya
Journal:  Gene       Date:  1989-12-21       Impact factor: 3.688

7.  Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae.

Authors:  R Hirata; Y Ohsumk; A Nakano; H Kawasaki; K Suzuki; Y Anraku
Journal:  J Biol Chem       Date:  1990-04-25       Impact factor: 5.157

8.  Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase.

Authors:  P M Kane; C T Yamashiro; D F Wolczyk; N Neff; M Goebl; T H Stevens
Journal:  Science       Date:  1990-11-02       Impact factor: 47.728

9.  Purification and characterization of VDE, a site-specific endonuclease from the yeast Saccharomyces cerevisiae.

Authors:  F S Gimble; J Thorner
Journal:  J Biol Chem       Date:  1993-10-15       Impact factor: 5.157

10.  Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae.

Authors:  F S Gimble; J Thorner
Journal:  Nature       Date:  1992-05-28       Impact factor: 49.962

View more
  11 in total

Review 1.  Chimeric restriction enzymes: what is next?

Authors:  S Chandrasegaran; J Smith
Journal:  Biol Chem       Date:  1999 Jul-Aug       Impact factor: 3.915

2.  Intronic GIY-YIG endonuclease gene in the mitochondrial genome of Podospora curvicolla: evidence for mobility.

Authors:  C Saguez; G Lecellier; F Koll
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

Review 3.  Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility.

Authors:  B S Chevalier; B L Stoddard
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

4.  High resolution crystal structure of domain I of the Saccharomyces cerevisiae homing endonuclease PI-SceI.

Authors:  Erik Werner; Wolfgang Wende; Alfred Pingoud; Udo Heinemann
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

5.  Homology modeling and mutational analysis of Ho endonuclease of yeast.

Authors:  Anya Bakhrat; Melissa S Jurica; Barry L Stoddard; Dina Raveh
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

6.  Mutational analysis of active-site residues in the Mycobacterium leprae RecA intein, a LAGLIDADG homing endonuclease: Asp(122) and Asp(193) are crucial to the double-stranded DNA cleavage activity whereas Asp(218) is not.

Authors:  Pawan Singh; Pankaj Tripathi; K Muniyappa
Journal:  Protein Sci       Date:  2010-01       Impact factor: 6.725

7.  Protein Splicing Activity of the Haloferax volcanii PolB-c Intein Is Sensitive to Homing Endonuclease Domain Mutations.

Authors:  Shachar Robinzon; Alexandra R Cawood; Mercedes A Ruiz; Uri Gophna; Neta Altman-Price; Kenneth V Mills
Journal:  Biochemistry       Date:  2020-09-02       Impact factor: 3.162

8.  Degeneration of a homing endonuclease and its target sequence in a wild yeast strain.

Authors:  F S Gimble
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

9.  Evolution of I-SceI homing endonucleases with increased DNA recognition site specificity.

Authors:  Rakesh Joshi; Kwok Ki Ho; Kristen Tenney; Jui-Hui Chen; Barbara L Golden; Frederick S Gimble
Journal:  J Mol Biol       Date:  2010-10-26       Impact factor: 5.469

Review 10.  Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy.

Authors:  George Silva; Laurent Poirot; Roman Galetto; Julianne Smith; Guillermo Montoya; Philippe Duchateau; Frédéric Pâques
Journal:  Curr Gene Ther       Date:  2011-02       Impact factor: 4.391

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.