Literature DB >> 9518459

Codon optimization of the gene encoding a domain from human type 1 neurofibromin protein results in a threefold improvement in expression level in Escherichia coli.

R S Hale1, G Thompson.   

Abstract

An internal domain from the human type 1 neurofibromin has previously been expressed in Escherichia coli as a fusion with gluthathione S-transferase (GST). The expression level of this protein was lower than expected and so a gene was constructed using the distribution of codons found in highly expressed E. coli proteins. Codons were assigned using a Microsoft Visual Basic computer program to give a distribution similar to those found in genes which are highly expressed in E. coli. The optimized gene was then cloned back into the same GST fusion plasmid and it was found that the expression of soluble protein had increased threefold.

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Year:  1998        PMID: 9518459     DOI: 10.1006/prep.1997.0825

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  11 in total

1.  Optimizing heterologous expression in dictyostelium: importance of 5' codon adaptation.

Authors:  E B Vervoort; A van Ravestein; N N van Peij; J C Heikoop; P J van Haastert; G F Verheijden; M H Linskens
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

2.  Optimization of the AT-content of codons immediately downstream of the initiation codon and evaluation of culture conditions for high-level expression of recombinant human G-CSF in Escherichia coli.

Authors:  Dasari V Krishna Rao; Joginapally V Rao; Mangamoori L Narasu; Adibhatla Kali S Bhujanga Rao
Journal:  Mol Biotechnol       Date:  2007-11-27       Impact factor: 2.695

3.  Molecules incorporating a benzothiazole core scaffold inhibit the N-myristoyltransferase of Plasmodium falciparum.

Authors:  Paul W Bowyer; Ruwani S Gunaratne; Munira Grainger; Chrislaine Withers-Martinez; Sasala R Wickramsinghe; Edward W Tate; Robin J Leatherbarrow; Katherine A Brown; Anthony A Holder; Deborah F Smith
Journal:  Biochem J       Date:  2007-12-01       Impact factor: 3.857

4.  Soluble Expression and Catalytic Properties of Codon-Optimized Recombinant Bromelain from MD2 Pineapple in Escherichia coli.

Authors:  Rafida Razali; Cahyo Budiman; Khairul Azfar Kamaruzaman; Vijay Kumar Subbiah
Journal:  Protein J       Date:  2021-03-13       Impact factor: 2.371

5.  Gene optimization mechanisms: a multi-gene study reveals a high success rate of full-length human proteins expressed in Escherichia coli.

Authors:  Barbara Maertens; Anne Spriestersbach; Uritza von Groll; Udo Roth; Jan Kubicek; Michael Gerrits; Marcus Graf; Michael Liss; Daniela Daubert; Ralf Wagner; Frank Schäfer
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

6.  Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization.

Authors:  Sang-Kyu Jung; Karen McDonald
Journal:  BMC Bioinformatics       Date:  2011-08-16       Impact factor: 3.307

7.  Comparative transcriptomic profile analysis of fed-batch cultures expressing different recombinant proteins in Escherichia coli.

Authors:  Ashish K Sharma; Shubhashree Mahalik; Chaitali Ghosh; Anuradha B Singh; Krishna J Mukherjee
Journal:  AMB Express       Date:  2011-10-22       Impact factor: 3.298

8.  Gene Designer: a synthetic biology tool for constructing artificial DNA segments.

Authors:  Alan Villalobos; Jon E Ness; Claes Gustafsson; Jeremy Minshull; Sridhar Govindarajan
Journal:  BMC Bioinformatics       Date:  2006-06-06       Impact factor: 3.169

9.  Combined protein construct and synthetic gene engineering for heterologous protein expression and crystallization using Gene Composer.

Authors:  Amy Raymond; Scott Lovell; Don Lorimer; John Walchli; Mark Mixon; Ellen Wallace; Kaitlin Thompkins; Kimberly Archer; Alex Burgin; Lance Stewart
Journal:  BMC Biotechnol       Date:  2009-04-21       Impact factor: 2.563

10.  A new and updated resource for codon usage tables.

Authors:  John Athey; Aikaterini Alexaki; Ekaterina Osipova; Alexandre Rostovtsev; Luis V Santana-Quintero; Upendra Katneni; Vahan Simonyan; Chava Kimchi-Sarfaty
Journal:  BMC Bioinformatics       Date:  2017-09-02       Impact factor: 3.169

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