Literature DB >> 9503021

An integrated radiation hybrid map of bovine chromosome 19 and ordered comparative mapping with human chromosome 17.

Y P Yang1, C E Rexroad, J Schläpfer, J E Womack.   

Abstract

We recently constructed a 5000-rad cattle whole-genome radiation hybrid panel with the primary objective of integrating linkage maps of microsatellites with evolutionarily conserved genes into one ordered map. This study utilized the panel to construct a radiation hybrid (RH) map of bovine chromosome 19 (BTA19). Twelve microsatellites from different cattle linkage maps, 15 coding genes, and 2 expressed sequence tags were placed on the BTA19 RH map, with 16 of the markers ordered with odds of at least 1000:1. When the BTA19 RH map was compared with human chromosome 17 cytogenetic and RH maps, rearrangements in linear order were revealed for homologous genes on these two chromosomes that are totally conserved at the level of synteny mapping. Radiation hybrids, which have to date been used almost exclusively in mapping the human genome, are a potentially powerful resource for constructing maps for other species and for ordered comparative mapping between species.

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Year:  1998        PMID: 9503021     DOI: 10.1006/geno.1997.5143

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  7 in total

1.  Cytogenetic alignment of the bovine chromosome 13 genome map by fluorescence in-situ hybridization of human chromosome 10 and 20 comparative markers.

Authors:  D S Gallagher; J Schläpfer; J D Burzlaff; J E Womack; D M Stelly; S K Davis; J F Taylor
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  Comparative mapping in the pig: localization of 214 expressed sequence tags.

Authors:  Susanna Cirera; Claus B Jørgensen; Milena Sawera; Terje Raudsepp; Bhanu P Chowdhary; Merete Fredholm
Journal:  Mamm Genome       Date:  2003-06       Impact factor: 2.957

3.  Parallel radiation hybrid mapping: a powerful tool for high-resolution genomic comparison.

Authors:  Y P Yang; J E Womack
Journal:  Genome Res       Date:  1998-07       Impact factor: 9.043

4.  Comparative organization of cattle chromosome 5 revealed by comparative mapping by annotation and sequence similarity and radiation hybrid mapping.

Authors:  A Ozawa; M R Band; J H Larson; J Donovan; C A Green; J E Womack; H A Lewin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

5.  A comparative radiation hybrid map of bovine chromosome 18 and homologous chromosomes in human and mice.

Authors:  Tom Goldammer; Srinivas R Kata; Ronald M Brunner; Ute Dorroch; Hanka Sanftleben; Manfred Schwerin; James E Womack
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

6.  An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.

Authors:  Marilyn Menotti-Raymond; Victor A David; Alejandro A Schäffer; James F Tomlin; Eduardo Eizirik; Cornel Phillip; David Wells; Joan U Pontius; Steven S Hannah; Stephen J O'Brien
Journal:  Genomics       Date:  2008-12-13       Impact factor: 5.736

7.  A high resolution RH map of the bovine major histocompatibility complex.

Authors:  Candice L Brinkmeyer-Langford; Christopher P Childers; Krista L Fritz; Ashley L Gustafson-Seabury; Marian Cothran; Terje Raudsepp; James E Womack; Loren C Skow
Journal:  BMC Genomics       Date:  2009-04-24       Impact factor: 3.969

  7 in total

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