Literature DB >> 9501180

3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli.

Z Li1, S Pandit, M P Deutscher.   

Abstract

In addition to tRNA and 5S RNA, Escherichia coli contains several other small, stable RNA species; these are M1, 10Sa, 6S, and 4.5S RNA. Although these RNAs are initially synthesized as precursor molecules, relatively little is known about their maturation. The data presented here show that 3' exoribonucleolytic trimming is required for the final maturation of each of these molecules. As found previously with tRNA, but not 5S RNA, any one of a number of exoribonucleases can carry out the trimming reaction in vivo, although RNases T and PH are most effective. In their absence, large amounts of immature molecules accumulate for most of the RNAs, and these can be converted to the mature forms in vitro by the purified RNases. A model is proposed that identifies a structural feature present in all the small, stable RNAs of E. coli, and describes how this structure together with the RNases influences the common mechanism for 3' maturation.

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Year:  1998        PMID: 9501180      PMCID: PMC19659          DOI: 10.1073/pnas.95.6.2856

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  10Sa RNA: processing by and inhibition of RNase III.

Authors:  E M Makarov; D Apirion
Journal:  Biochem Int       Date:  1992-05

2.  The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli.

Authors:  K O Kelly; M P Deutscher
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

3.  RNase PH is essential for tRNA processing and viability in RNase-deficient Escherichia coli cells.

Authors:  K O Kelly; N B Reuven; Z Li; M P Deutscher
Journal:  J Biol Chem       Date:  1992-08-15       Impact factor: 5.157

4.  Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli.

Authors:  K A Peck-Miller; S Altman
Journal:  J Mol Biol       Date:  1991-09-05       Impact factor: 5.469

5.  Small stable RNAs from Escherichia coli: evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA.

Authors:  S Y Lee; S C Bailey; D Apirion
Journal:  J Bacteriol       Date:  1978-02       Impact factor: 3.490

6.  Catalytic activity of an RNA molecule prepared by transcription in vitro.

Authors:  C Guerrier-Takada; S Altman
Journal:  Science       Date:  1984-01-20       Impact factor: 47.728

7.  Purification and characterization of Escherichia coli RNase T.

Authors:  M P Deutscher; C W Marlor
Journal:  J Biol Chem       Date:  1985-06-10       Impact factor: 5.157

8.  Nucleotide sequence of the gene encoding the RNA subunit (M1 RNA) of ribonuclease P from Escherichia coli.

Authors:  R E Reed; M F Baer; C Guerrier-Takada; H Donis-Keller; S Altman
Journal:  Cell       Date:  1982-09       Impact factor: 41.582

9.  Initiation of translation is impaired in E. coli cells deficient in 4.5S RNA.

Authors:  D B Bourgaize; M J Fournier
Journal:  Nature       Date:  1987 Jan 15-21       Impact factor: 49.962

10.  tRNA nucleotidyltransferase is not essential for Escherichia coli viability.

Authors:  L Zhu; M P Deutscher
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598

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  82 in total

Review 1.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

Authors:  Y Zuo; M P Deutscher
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

2.  RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli.

Authors:  P E Marujo; E Hajnsdorf; J Le Derout; R Andrade; C M Arraiano; P Régnier
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

3.  SmpB functions in various steps of trans-translation.

Authors:  Kyoko Hanawa-Suetsugu; Mitsuru Takagi; Hachiro Inokuchi; Hyouta Himeno; Akira Muto
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

4.  Two-piece tmRNA in cyanobacteria and its structural analysis.

Authors:  Cyril Gaudin; Xiong Zhou; Kelly P Williams; Brice Felden
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

Review 5.  The 3' end formation in small RNAs.

Authors:  Karthika Perumal; Ram Reddy
Journal:  Gene Expr       Date:  2002

6.  RNA quality control: degradation of defective transfer RNA.

Authors:  Zhongwei Li; Stephan Reimers; Shilpa Pandit; Murray P Deutscher
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

7.  tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation.

Authors:  Kenneth C Keiler; Lucy Shapiro
Journal:  J Bacteriol       Date:  2003-03       Impact factor: 3.490

8.  Hfq affects the length and the frequency of short oligo(A) tails at the 3' end of Escherichia coli rpsO mRNAs.

Authors:  Jacques Le Derout; Marc Folichon; Federica Briani; Gianni Dehò; Philippe Régnier; Eliane Hajnsdorf
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

9.  Use of nucleotide analogs by class I and class II CCA-adding enzymes (tRNA nucleotidyltransferase): deciphering the basis for nucleotide selection.

Authors:  Hyundae D Cho; Adegboyega K Oyelere; Scott A Strobel; Alan M Weiner
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

10.  MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli.

Authors:  Shuo Chen; Aixia Zhang; Lawrence B Blyn; Gisela Storz
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

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