Literature DB >> 9478203

From RNA hairpins to kisses to pseudoknots.

I Tinoco1.   

Abstract

Formation of RNA hairpins presumably initiate the folding of an RNA into its biologically functional form. The stems of the hairpin loops grow to produce A-form helices interrupted by internal loops and bulges. The loops then interact with metal ions and with other loops and bulges to finish folding the RNA into its native biological state. The three-dimensional structures of several of these secondary and tertiary motifs have been determined by nuclear magnetic resonance.

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Year:  1997        PMID: 9478203

Source DB:  PubMed          Journal:  Nucleic Acids Symp Ser        ISSN: 0261-3166


  7 in total

1.  Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme.

Authors:  H Isambert; E D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

2.  The telomerase RNA pseudoknot is critical for the stable assembly of a catalytically active ribonucleoprotein.

Authors:  D Gilley; E H Blackburn
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

3.  Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.

Authors:  A Xayaphoummine; T Bucher; F Thalmann; H Isambert
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

4.  Probing the structure of DNA aptamers with a classic heterocycle.

Authors:  Arthur E Wood; G Reid Bishop
Journal:  Molecules       Date:  2004-02-28       Impact factor: 4.411

5.  Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site.

Authors:  J S Lodmell; C Ehresmann; B Ehresmann; R Marquet
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

6.  Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases.

Authors:  J Völker; N Makube; G E Plum; H H Klump; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-04       Impact factor: 11.205

7.  Sensing complex regulatory networks by conformationally controlled hairpin ribozymes.

Authors:  S Hani Najafi-Shoushtari; Günter Mayer; Michael Famulok
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

  7 in total

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