Literature DB >> 9475994

DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment.

J Stoye1, V Moulton, A W Dress.   

Abstract

MOTIVATION: DCA is a new computer program for multiple sequence alignment which utilizes a 'divide-and-conquer' type of heuristic approach. AVAILABILITY: The algorithm is freely available from http://bibiserv.TechFak.Uni-Bielefeld.DE/dca/.

Entities:  

Mesh：

Year:  1997        PMID： 9475994     DOI： 10.1093/bioinformatics/13.6.625

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  10 in total

1.  Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching.

Authors:  R D Page
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

2.  A memory-efficient algorithm for multiple sequence alignment with constraints.

Authors:  Chin Lung Lu; Yen Pin Huang
Journal:  Bioinformatics       Date:  2004-09-16       Impact factor: 6.937

3.  TonB induces conformational changes in surface-exposed loops of FhuA, outer membrane receptor of Escherichia coli.

Authors:  Karron J James; Mark A Hancock; Violaine Moreau; Franck Molina; James W Coulton
Journal:  Protein Sci       Date:  2008-07-24       Impact factor: 6.725

4.  MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.

Authors:  Kirill Kryukov; Naruya Saitou
Journal:  BMC Bioinformatics       Date:  2010-03-18       Impact factor: 3.169

5.  Protein multiple sequence alignment by hybrid bio-inspired algorithms.

Authors:  Vincenzo Cutello; Giuseppe Nicosia; Mario Pavone; Igor Prizzi
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

6.  A fast parallel algorithm for finding the longest common sequence of multiple biosequences.

Authors:  Yixin Chen; Andrew Wan; Wei Liu
Journal:  BMC Bioinformatics       Date:  2006-12-12       Impact factor: 3.169

7.  Refining multiple sequence alignments with conserved core regions.

Authors:  Saikat Chakrabarti; Christopher J Lanczycki; Anna R Panchenko; Teresa M Przytycka; Paul A Thiessen; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2006-05-17       Impact factor: 16.971

8.  4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.

Authors:  Philipp N Seibel; Tobias Müller; Thomas Dandekar; Jörg Schultz; Matthias Wolf
Journal:  BMC Bioinformatics       Date:  2006-11-13       Impact factor: 3.169

9.  Post-Alignment Adjustment and Its Automation.

Authors:  Xuhua Xia
Journal:  Genes (Basel)       Date:  2021-11-18       Impact factor: 4.096

10.  GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.

Authors:  Anna-Lena Lamprecht; Tiziana Margaria; Bernhard Steffen; Alexander Sczyrba; Sven Hartmeier; Robert Giegerich
Journal:  BMC Bioinformatics       Date:  2008-04-25       Impact factor: 3.169
  10 in total

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