Literature DB >> 9461467

Nucleosomes are not necessary for promoter-proximal pausing in vitro on the Drosophila hsp70 promoter.

L R Benjamin1, D S Gilmour.   

Abstract

RNA polymerase II has been found to pause stably on several metazoan genes in a promoter-proximal region located 20-40 nt downstream from the start site of transcription. Escape of polymerase from this paused state has been proposed to be a rate limiting step in transcription of some genes. A study of the human hsp70 promoter showed that a nucleosome positioned downstream from the transcription start was a key component in establishing a stably paused polymerase in one cell-free system. We tested whether these results could be extended to the Drosophila hsp70 promoter in a Drosophila cell-free system and found that polymerase paused stably on the promoter even when the length of DNA downstream from the transcription start was not sufficient for assembly of a nucleosome. Our results indicate that a downstream nucleosome is not a universal requirement for stably pausing RNA polymerase in the promoter-proximal region.

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Year:  1998        PMID: 9461467      PMCID: PMC147342          DOI: 10.1093/nar/26.4.1051

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  Mapping of RNA polymerase on mammalian genes in cells and nuclei.

Authors:  J Mirkovitch; J E Darnell
Journal:  Mol Biol Cell       Date:  1992-10       Impact factor: 4.138

2.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

3.  Heat shock-regulated transcription in vitro from a reconstituted chromatin template.

Authors:  P B Becker; S K Rabindran; C Wu
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

4.  Analysis of the signals for transcription termination by purified RNA polymerase II.

Authors:  T K Kerppola; C M Kane
Journal:  Biochemistry       Date:  1990-01-09       Impact factor: 3.162

Review 5.  Histone structure and the organization of the nucleosome.

Authors:  V Ramakrishnan
Journal:  Annu Rev Biophys Biomol Struct       Date:  1997

6.  Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones.

Authors:  Y Lorch; J W LaPointe; R D Kornberg
Journal:  Cell       Date:  1987-04-24       Impact factor: 41.582

7.  TATA box-dependent protein-DNA interactions are detected on heat shock and histone gene promoters in nuclear extracts derived from Drosophila melanogaster embryos.

Authors:  D S Gilmour; T J Dietz; S C Elgin
Journal:  Mol Cell Biol       Date:  1988-08       Impact factor: 4.272

8.  Stability of Drosophila RNA polymerase II elongation complexes in vitro.

Authors:  D D Kephart; N F Marshall; D H Price
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

9.  The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region.

Authors:  A Krumm; T Meulia; M Brunvand; M Groudine
Journal:  Genes Dev       Date:  1992-11       Impact factor: 11.361

10.  Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts.

Authors:  M D Biggin; R Tjian
Journal:  Cell       Date:  1988-06-03       Impact factor: 41.582

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  16 in total

Review 1.  Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Authors:  Daniel A Gilchrist; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2012-03-02

2.  NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila.

Authors:  Chwen-Huey Wu; Yuki Yamaguchi; Lawrence R Benjamin; Maria Horvat-Gordon; Jodi Washinsky; Espen Enerly; Jan Larsson; Andrew Lambertsson; Hiroshi Handa; David Gilmour
Journal:  Genes Dev       Date:  2003-06-01       Impact factor: 11.361

3.  Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing.

Authors:  Jian Li; Yingyun Liu; Ho Sung Rhee; Saikat Kumar B Ghosh; Lu Bai; B Franklin Pugh; David S Gilmour
Journal:  Mol Cell       Date:  2013-06-06       Impact factor: 17.970

Review 4.  Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

Authors:  Sergei Nechaev; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2010-11-13

5.  Potential targets for HSF1 within the preinitiation complex.

Authors:  C X Yuan; W B Gurley
Journal:  Cell Stress Chaperones       Date:  2000-07       Impact factor: 3.667

6.  Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor.

Authors:  Jian Li; David S Gilmour
Journal:  EMBO J       Date:  2013-05-24       Impact factor: 11.598

7.  Localized recruitment of a chromatin-remodeling activity by an activator in vivo drives transcriptional elongation.

Authors:  Laura L Corey; Christine S Weirich; Ivor J Benjamin; Robert E Kingston
Journal:  Genes Dev       Date:  2003-06-01       Impact factor: 11.361

8.  TFIID Enables RNA Polymerase II Promoter-Proximal Pausing.

Authors:  Charli B Fant; Cecilia B Levandowski; Kapil Gupta; Zachary L Maas; John Moir; Jonathan D Rubin; Andrew Sawyer; Meagan N Esbin; Jenna K Rimel; Olivia Luyties; Michael T Marr; Imre Berger; Robin D Dowell; Dylan J Taatjes
Journal:  Mol Cell       Date:  2020-03-30       Impact factor: 17.970

Review 9.  Promoter proximal pausing on genes in metazoans.

Authors:  David S Gilmour
Journal:  Chromosoma       Date:  2008-10-02       Impact factor: 4.316

10.  Synergistic action of RNA polymerases in overcoming the nucleosomal barrier.

Authors:  Jing Jin; Lu Bai; Daniel S Johnson; Robert M Fulbright; Maria L Kireeva; Mikhail Kashlev; Michelle D Wang
Journal:  Nat Struct Mol Biol       Date:  2010-05-09       Impact factor: 15.369

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