Literature DB >> 9454605

Electron injection through a specific pathway determines the outcome of oxygen activation at the diiron cluster in the F208Y mutant of Escherichia coli ribonucleotide reductase protein R2.

S E Parkin1, S Chen, B A Ley, L Mangravite, D E Edmondson, B H Huynh, J M Bollinger.   

Abstract

Protein R2 of ribonucleotide reductase from Escherichia coli contains a dinuclear iron cluster, which reductively activates O2 to produce the enzyme's functionally essential tyrosyl radical by one-electron oxidation of residue Y122. A key step in this reaction is the rapid injection of a single electron from an exogenous reductant (Fe2+ or ascorbate) during formation of the radical-generating intermediate, cluster X, from the diiron(II) cluster and O2. As this step leaves only one of the two oxidizing equivalents of the initial diiron(II)-O2 adduct, it commits the reaction to a one-electron oxidation outcome and precludes possible two-electron alternatives (as occur in the related diiron bacterial alkane hydroxylases and fatty acyl desaturases). In the F208Y site-directed mutant of R2, Y208 is hydroxylated (a two-electron oxidation) in preference to the normal reaction [Aberg, A., Ormö, M., Nordlund, P., & Sjöberg, B. M. (1993) Biochemistry 32, 9845-9850], implying that this substitution blocks electron injection or (more likely) introduces an endogenous reductant (Y208) that effectively competes. Here we demonstrate that O2 activation in the F208Y mutant of R2 partitions between these two-electron (Y208 hydroxylation) and one-electron (Y122 radical production) outcomes and that the latter becomes predominant under conditions which favor electron injection (namely, high concentration of the reductant ascorbate). Moreover, we show that the sensitivity of the partition ratio to ascorbate concentration is strictly dependent on the integrity of a hydrogen-bond network involving the near surface residue W48: when this residue is substituted with F, Y208 hydroxylation predominates irrespective of ascorbate concentration. These data suggest that the hydrogen-bond network involving W48 is a specific electron-transfer pathway between the cofactor site and the protein surface.

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Year:  1998        PMID: 9454605     DOI: 10.1021/bi9723717

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Self-hydroxylation of taurine/alpha-ketoglutarate dioxygenase: evidence for more than one oxygen activation mechanism.

Authors:  Kevin D Koehntop; Sudha Marimanikkuppam; Matthew J Ryle; Robert P Hausinger; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-12-01       Impact factor: 3.358

2.  Characterization of quinolinate synthases from Escherichia coli, Mycobacterium tuberculosis, and Pyrococcus horikoshii indicates that [4Fe-4S] clusters are common cofactors throughout this class of enzymes.

Authors:  Allison H Saunders; Amy E Griffiths; Kyung-Hoon Lee; Robert M Cicchillo; Loretta Tu; Jeffrey A Stromberg; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2008-09-20       Impact factor: 3.162

3.  The manganese/iron-carboxylate proteins: what is what, where are they, and what can the sequences tell us?

Authors:  Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2010-03       Impact factor: 3.358

4.  Cfr and RlmN contain a single [4Fe-4S] cluster, which directs two distinct reactivities for S-adenosylmethionine: methyl transfer by SN2 displacement and radical generation.

Authors:  Tyler L Grove; Matthew I Radle; Carsten Krebs; Squire J Booker
Journal:  J Am Chem Soc       Date:  2011-11-18       Impact factor: 15.419

5.  Bacillus subtilis class Ib ribonucleotide reductase is a dimanganese(III)-tyrosyl radical enzyme.

Authors:  Yan Zhang; Joanne Stubbe
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

6.  Deciphering radical transport in the large subunit of class I ribonucleotide reductase.

Authors:  Patrick G Holder; Arturo A Pizano; Bryce L Anderson; Joanne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2012-01-03       Impact factor: 15.419

7.  Why multiple small subunits (Y2 and Y4) for yeast ribonucleotide reductase? Toward understanding the role of Y4.

Authors:  J Ge; D L Perlstein; H H Nguyen; G Bar; R G Griffin; J Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

8.  Radical-translocation intermediates and hurdling of pathway defects in "super-oxidized" (Mn(IV)/Fe(IV)) Chlamydia trachomatis ribonucleotide reductase.

Authors:  Laura M K Dassama; Wei Jiang; Paul T Varano; Maria-Eirini Pandelia; Denise A Conner; Jiajia Xie; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2012-12-04       Impact factor: 15.419

9.  Characterization of NO adducts of the diiron center in protein R2 of Escherichia coli ribonucleotide reductase and site-directed variants; implications for the O2 activation mechanism.

Authors:  Shen Lu; Eduardo Libby; Lana Saleh; Gang Xing; J Martin Bollinger; Pierre Moënne-Loccoz
Journal:  J Biol Inorg Chem       Date:  2004-08-11       Impact factor: 3.358

10.  Mechanism of inactivation of human ribonucleotide reductase with p53R2 by gemcitabine 5'-diphosphate.

Authors:  Jun Wang; Gregory J S Lohman; JoAnne Stubbe
Journal:  Biochemistry       Date:  2009-12-15       Impact factor: 3.162

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