Literature DB >> 9441939

Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: application of a new three-dimensional reconstruction algorithm and objective comparison with weighted backprojection.

R Marabini1, E Rietzel, R Schroeder, G T Herman, J M Carazo.   

Abstract

In this work we propose a reconstruction algorithm (ART with blobs) that has not been previously used in electron Tomography and we compare it with the standard method in the field (weighted back projection, WBP). We assume that only a limited set of very noisy images, collected around a single axis tilt, is available; which is a typical situation in Electron Tomography. In general, the reconstruction problem is underdetermined (due to the limited number of projections) and the data are inconsistent (due to the high level of noise). The evaluation of the results is performed in a rigorous way by a task-oriented approach which makes use of numerical observers. ART with blobs outperforms WBP for a number of key tasks. Results are presented both for simplified line integral data and for realistic simulations of macromolecular structures embedded in amorphous ice.

Mesh:

Year:  1997        PMID: 9441939     DOI: 10.1006/jsbi.1997.3923

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  8 in total

Review 1.  3D electron microscopy of biological nanomachines: principles and applications.

Authors:  C O S Sorzano; S Jonic; M Cottevieille; E Larquet; N Boisset; S Marco
Journal:  Eur Biophys J       Date:  2007-07-05       Impact factor: 1.733

2.  Electron lambda-tomography.

Authors:  Eric Todd Quinto; Ulf Skoglund; Ozan Oktem
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-02       Impact factor: 11.205

3.  A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction.

Authors:  Shawn Q Zheng; Eric Branlund; Bettina Kesthelyi; Michael B Braunfeld; Yifan Cheng; John W Sedat; David A Agard
Journal:  Ultramicroscopy       Date:  2011-04-01       Impact factor: 2.689

Review 4.  Cryo-electron tomography of bacterial viruses.

Authors:  Ricardo C Guerrero-Ferreira; Elizabeth R Wright
Journal:  Virology       Date:  2013-01-05       Impact factor: 3.616

5.  Morphology of influenza B/Lee/40 determined by cryo-electron microscopy.

Authors:  Garrett Katz; Younes Benkarroum; Hui Wei; William J Rice; Doris Bucher; Alexandra Alimova; Al Katz; Joanna Klukowska; Gabor T Herman; Paul Gottlieb
Journal:  PLoS One       Date:  2014-02-06       Impact factor: 3.240

6.  High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs.

Authors:  Xiaohua Wan; Fa Zhang; Qi Chu; Zhiyong Liu
Journal:  BMC Bioinformatics       Date:  2012-06-25       Impact factor: 3.169

Review 7.  A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

Authors:  C O S Sorzano; J Vargas; J Otón; J M de la Rosa-Trevín; J L Vilas; M Kazemi; R Melero; L Del Caño; J Cuenca; P Conesa; J Gómez-Blanco; R Marabini; J M Carazo
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

8.  A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions.

Authors:  Lubomír Kováčik; Sami Kereïche; Sami Kerïeche; Johanna L Höög; Pavel Jůda; Pavel Matula; Ivan Raška
Journal:  J Struct Biol       Date:  2014-02-17       Impact factor: 2.867

  8 in total

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