Literature DB >> 9441933

Perspectives of molecular and cellular electron tomography.

A J Koster1, R Grimm, D Typke, R Hegerl, A Stoschek, J Walz, W Baumeister.   

Abstract

After a general introduction to three-dimensional electron microscopy and particularly to electron tomography (ET), the perspectives of applying ET to native (frozen-hydrated) cellular structures are discussed. In ET, a set of 2-D images of an object is recorded at different viewing directions and is then used for calculating a 3-D image. ET at a resolution of 2-5 nm would allow the 3-D organization of structural cellular components to be studied and would provide important information about spatial relationships and interactions. The question of whether it is a realistic long-term goal to visualize or--by sophisticated pattern recognition methods--identify macromolecules in cells frozen in toto or in frozen sections of cells is addressed. Because of the radiation sensitivity of biological specimens, a prerequisite of application of ET is the automation of the imaging process. Technical aspects of automated ET as realized in Martinsried and experiences are presented, and limitations of the technique are identified, both theoretically and experimentally. Possible improvements of instrumentation to overcome at least part of the limitations are discussed in some detail. Those means include increasing the accelerating voltage into the intermediate voltage range (300 to 500 kV), energy filtering, the use of a field emission gun, and a liquid-helium-cooled specimen stage. Two additional sections deal with ET of isolated macromolecules and of macromolecular structures in situ, and one section is devoted to possible methods for the detection of structures in volume data.

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Year:  1997        PMID: 9441933     DOI: 10.1006/jsbi.1997.3933

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  76 in total

1.  Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms.

Authors:  J Bohm; A S Frangakis; R Hegerl; S Nickell; D Typke; W Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Magnetite morphology and life on Mars.

Authors:  P R Buseck; R E Dunin-Borkowski; B Devouard; R B Frankel; M R McCartney; P A Midgley; M Pósfai; M Weyland
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

3.  Electron tomography of frozen-hydrated isolated triad junctions.

Authors:  T Wagenknecht; C-E Hsieh; B K Rath; S Fleischer; M Marko
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

4.  Cryo-electron tomography of bacteriophage phi6 procapsids shows random occupancy of the binding sites for RNA polymerase and packaging NTPase.

Authors:  Daniel Nemecek; J Bernard Heymann; Jian Qiao; Leonard Mindich; Alasdair C Steven
Journal:  J Struct Biol       Date:  2010-06-09       Impact factor: 2.867

5.  Identification of macromolecular complexes in cryoelectron tomograms of phantom cells.

Authors:  Achilleas S Frangakis; Jochen Böhm; Friedrich Förster; Stephan Nickell; Daniela Nicastro; Dieter Typke; Reiner Hegerl; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

6.  Involvement of the endoplasmic reticulum in peroxisome formation.

Authors:  Hans J Geuze; Jean Luc Murk; An K Stroobants; Janice M Griffith; Monique J Kleijmeer; Abraham J Koster; Arie J Verkleij; Ben Distel; Henk F Tabak
Journal:  Mol Biol Cell       Date:  2003-04-04       Impact factor: 4.138

7.  Dynamic organization of the actin system in the motile cells of Dictyostelium.

Authors:  Till Bretschneider; James Jonkman; Jana Köhler; Ohad Medalia; Karmela Barisic; Igor Weber; Ernst H K Stelzer; Wolfgang Baumeister; Günther Gerisch
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

8.  Rearrangement of the 16S precursor subunits is essential for the formation of the active 20S proteasome.

Authors:  Srinivas Mullapudi; Lee Pullan; Ozlem T Bishop; Hassan Khalil; James K Stoops; Roland Beckmann; Peter M Kloetzel; Elke Krüger; Pawel A Penczek
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

9.  Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography.

Authors:  Alexander Rigort; Felix J B Bäuerlein; Elizabeth Villa; Matthias Eibauer; Tim Laugks; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

10.  Linking ultrastructure and function in four genera of anaerobic ammonium-oxidizing bacteria: cell plan, glycogen storage, and localization of cytochrome C proteins.

Authors:  Laura van Niftrik; Willie J C Geerts; Elly G van Donselaar; Bruno M Humbel; Richard I Webb; John A Fuerst; Arie J Verkleij; Mike S M Jetten; Marc Strous
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

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