Literature DB >> 9441881

Use of global symmetries in automated signal class recognition by a bayesian method

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Abstract

Automated or semiautomated pattern recognition in multidimensional NMR spectroscopy is strongly hampered by the large number of noise and artifact peaks occurring under practical conditions. A general Bayesian method which is able to assign probabilities that observed peaks are members of given signal classes (e.g., the class of true resonance peaks or the class of noise and artifact peaks) was proposed previously. The discriminative power of this approach is dependent on the choice of the properties characterizing the peaks. The automated class recognition is improved by the addition of a nonlocal feature, the similarities of peak shapes in symmetry-related positions. It turns out that this additional property strongly decreases the overlap of the multivariate probability distributions for true signals and noise and hence largely increases the discrimination of true resonance peaks from noise and artifacts. Copyright 1997 Academic Press. Copyright 1997Academic Press

Year:  1997        PMID: 9441881     DOI: 10.1006/jmre.1997.1241

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  6 in total

1.  Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE).

Authors:  Wolfram Gronwald; Sherif Moussa; Ralph Elsner; Astrid Jung; Bernhard Ganslmeier; Jochen Trenner; Werner Kremer; Klaus-Peter Neidig; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

2.  Automated protein NMR structure determination using wavelet de-noised NOESY spectra.

Authors:  Felician Dancea; Ulrich Günther
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

3.  AUREMOL-RFAC-3D, combination of R-factors and their use for automated quality assessment of protein solution structures.

Authors:  Wolfram Gronwald; Konrad Brunner; Renate Kirchhöfer; Jochen Trenner; Klaus-Peter Neidig; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2006-11-29       Impact factor: 2.835

4.  Chemical shift optimization in multidimensional NMR spectra by AUREMOL-SHIFTOPT.

Authors:  Kumaran Baskaran; Renate Kirchhöfer; Fritz Huber; Jochen Trenner; Konrad Brunner; Wolfram Gronwald; Klaus-Peter Neidig; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2009-02-21       Impact factor: 2.835

5.  RFAC, a program for automated NMR R-factor estimation.

Authors:  W Gronwald; R Kirchhöfer; A Görler; W Kremer; B Ganslmeier; K P Neidig; H R Kalbitzer
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

Review 6.  Structure-oriented methods for protein NMR data analysis.

Authors:  Guillermo A Bermejo; Miguel Llinás
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-03-03       Impact factor: 9.795

  6 in total

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