Literature DB >> 9425655

Bioinformatics: from genome data to biological knowledge.

M A Andrade1, C Sander.   

Abstract

Recently, molecular biologists have sequenced about a dozen bacterial genomes and the first eukaryotic genome. We can now obtain answers to detailed questions about the complete set of genes of an organism. Bioinformatics methods are increasingly used for attaching biological knowledge to long lists of genes, assigning genes to biological pathways, comparing the gene sets of different species, identifying specificity factors, and describing sets of highly conserved proteins common to all domains of life. Substantial progress has recently been made in the availability of primary and added-value databases, in the development of algorithms and of network information services for genome analysis. The pharmaceutical industry has greatly benefited from the accumulation of sequence data through the identification of targets and candidates for the development of drugs, vaccines, diagnostic markers and therapeutic proteins.

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Year:  1997        PMID: 9425655     DOI: 10.1016/s0958-1669(97)80118-8

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  13 in total

1.  Transcription in archaea.

Authors:  N C Kyrpides; C A Ouzounis
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

2.  Identification of transcripts expressed under functional differentiation in primary culture of cerebral cortical neurons.

Authors:  Qiang Li; Zhi Li; Chun-Xiao Sun; Albert Cheung-Hoi Yu
Journal:  Neurochem Res       Date:  2002-02       Impact factor: 3.996

3.  Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns.

Authors:  Javier De Las Rivas; Juan Jose Lozano; Angel R Ortiz
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

4.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.

Authors:  M Pellegrini; E M Marcotte; M J Thompson; D Eisenberg; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

5.  Bioinformatics and the developing world.

Authors:  Sándor Pongor; David Landsman
Journal:  Biotechnol Dev Monit       Date:  1999-12

6.  Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Authors:  Haiyuan Yu; Nicholas M Luscombe; Hao Xin Lu; Xiaowei Zhu; Yu Xia; Jing-Dong J Han; Nicolas Bertin; Sambath Chung; Marc Vidal; Mark Gerstein
Journal:  Genome Res       Date:  2004-06       Impact factor: 9.043

7.  Physicochemical characterization and functional site analysis of lactoferrin gene of Vechur cow.

Authors:  Anisha Shashidharan; Ruchi Singh; Salini Bhasker; Chinnamma Mohankumar
Journal:  Bioinformation       Date:  2011-06-23

8.  Probabilistic annotation of protein sequences based on functional classifications.

Authors:  Emmanuel D Levy; Christos A Ouzounis; Walter R Gilks; Benjamin Audit
Journal:  BMC Bioinformatics       Date:  2005-12-14       Impact factor: 3.169

Review 9.  Calling International Rescue: knowledge lost in literature and data landslide!

Authors:  Teresa K Attwood; Douglas B Kell; Philip McDermott; James Marsh; Steve R Pettifer; David Thorne
Journal:  Biochem J       Date:  2009-12-10       Impact factor: 3.857

10.  Quantitative sequence-function relationships in proteins based on gene ontology.

Authors:  Vineet Sangar; Daniel J Blankenberg; Naomi Altman; Arthur M Lesk
Journal:  BMC Bioinformatics       Date:  2007-08-08       Impact factor: 3.169

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