Literature DB >> 9425094

Substituent effects on the binding of phenols to the D38N mutant of 3-oxo-delta5-steroid isomerase. A probe for the nature of hydrogen bonding to the intermediate.

I P Petrounia1, R M Pollack.   

Abstract

The nature of hydrogen bonding to the intermediate of the reaction catalyzed by 3-oxo-Delta5-steroid isomerase (KSI) was investigated. Substituted phenols bind tightly to the active site of the D38N mutant of KSI, and are analogs of the intermediate dienol. These D38N-phenol complexes exhibit fluorescence, NMR, and UV spectral characteristics similar to D38N complexed with phenolic steroids. The binding of phenols to D38N is satisfactorily described by the modified Bronsted equation: log KD = 0.85(pKa) - 0.63 pi - 6.3 (n = 10, r = 0.967), where KD is the dissociation constant of the complex and pi is the hydrophobicity parameter for the phenol substituent. The high value of the Bronsted alpha (0.85 +/- 0.08) indicates that the negative charge in the D38N-phenol complex, and by implication in the KSI-intermediate complex, is localized almost exclusively on the bound ligand. It is concluded that stabilization of the anionic (dienolate) intermediate is provided by ordinary hydrogen bonds from the enzyme acids Tyr-14 and Asp-99, rather than low-barrier hydrogen bonds.

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Year:  1998        PMID: 9425094     DOI: 10.1021/bi972262s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Evaluation of the energetics of the concerted acid-base mechanism in enzymatic catalysis: the case of ketosteroid isomerase.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  J Phys Chem B       Date:  2011-12-28       Impact factor: 2.991

2.  Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.

Authors:  Aaron T Fafarman; Paul A Sigala; Jason P Schwans; Timothy D Fenn; Daniel Herschlag; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Thermodynamic framework for identifying free energy inventories of enzyme catalytic cycles.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

4.  Hydrogen bonding in the active site of ketosteroid isomerase: electronic inductive effects and hydrogen bond coupling.

Authors:  Philip Hanoian; Paul A Sigala; Daniel Herschlag; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

5.  Kemp Eliminase Activity of Ketosteroid Isomerase.

Authors:  Vandana Lamba; Enis Sanchez; Lauren Rose Fanning; Kathryn Howe; Maria Alejandra Alvarez; Daniel Herschlag; Marcello Forconi
Journal:  Biochemistry       Date:  2017-01-20       Impact factor: 3.162

6.  Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Paul A Sigala; Daniel A Kraut; Jose M M Caaveiro; Brandon Pybus; Eliza A Ruben; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2008-09-23       Impact factor: 15.419

7.  Water in the active site of ketosteroid isomerase.

Authors:  Philip Hanoian; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2011-07-13       Impact factor: 3.162

8.  Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Aaron T Fafarman; Jason P Schwans; Stephen D Fried; Timothy D Fenn; Jose M M Caaveiro; Brandon Pybus; Dagmar Ringe; Gregory A Petsko; Steven G Boxer; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

9.  Dissecting the paradoxical effects of hydrogen bond mutations in the ketosteroid isomerase oxyanion hole.

Authors:  Daniel A Kraut; Paul A Sigala; Timothy D Fenn; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

10.  Hydrogen bond coupling in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Jose M M Caaveiro; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  Biochemistry       Date:  2009-07-28       Impact factor: 3.162

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