Literature DB >> 9421535

Random-priming in vitro recombination: an effective tool for directed evolution.

Z Shao1, H Zhao, L Giver, F H Arnold.   

Abstract

A simple and efficient method for in vitro mutagenesis and recombination of polynucleotide sequences is reported. The method involves priming template polynucleotide(s) with random-sequence primers and extending to generate a pool of short DNA fragments which contain a controllable level of point mutations. The fragments are reassembled during cycles of denaturation, annealing and further enzyme-catalyzed DNA polymerization to produce a library of full-length sequences. Screening or selecting the expressed gene products leads to new variants with improved functions, as demonstrated by the recombination of genes encoding different thermostable subtilisins in order to obtain enzymes more stable than either parent.

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Year:  1998        PMID: 9421535      PMCID: PMC147287          DOI: 10.1093/nar/26.2.681

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Group II intron RNA-catalyzed recombination of RNA in vitro.

Authors:  M Mörl; C Schmelzer
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

2.  Strategies for the in vitro evolution of protein function: enzyme evolution by random recombination of improved sequences.

Authors:  J C Moore; H M Jin; O Kuchner; F H Arnold
Journal:  J Mol Biol       Date:  1997-09-26       Impact factor: 5.469

3.  Antibody-ribosome-mRNA (ARM) complexes as efficient selection particles for in vitro display and evolution of antibody combining sites.

Authors:  M He; M J Taussig
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

Review 4.  Directed evolution of enzyme catalysts.

Authors:  O Kuchner; F H Arnold
Journal:  Trends Biotechnol       Date:  1997-12       Impact factor: 19.536

5.  Functional and nonfunctional mutations distinguished by random recombination of homologous genes.

Authors:  H Zhao; F H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

6.  Generation of large libraries of random mutants in Bacillus subtilis by PCR-based plasmid multimerization.

Authors:  S Shafikhani; R A Siegel; E Ferrari; V Schellenberger
Journal:  Biotechniques       Date:  1997-08       Impact factor: 1.993

7.  Nucleotide sequence of an anti-fluorescyl hapten antibody heavy chain variable region gene from a BALB/c mouse hybridoma cell line.

Authors:  Z Q Liu; C Wood; T T Wu
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

8.  Rapid evolution of a protein in vitro by DNA shuffling.

Authors:  W P Stemmer
Journal:  Nature       Date:  1994-08-04       Impact factor: 49.962

9.  DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution.

Authors:  W P Stemmer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

10.  Directed evolution of a para-nitrobenzyl esterase for aqueous-organic solvents.

Authors:  J C Moore; F H Arnold
Journal:  Nat Biotechnol       Date:  1996-04       Impact factor: 54.908

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  12 in total

1.  Understanding thermostability in cytochrome P450 by combinatorial mutagenesis.

Authors:  S A Maves; S G Sligar
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Exchanging the active site between phytases for altering the functional properties of the enzyme.

Authors:  M Lehmann; R Lopez-Ulibarri; C Loch; C Viarouge; M Wyss; A P van Loon
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

3.  Generating segmental mutations in haloalkane dehalogenase: a novel part in the directed evolution toolbox.

Authors:  Mariël G Pikkemaat; Dick B Janssen
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

Review 4.  Biphenyl dioxygenases: functional versatilities and directed evolution.

Authors:  Kensuke Furukawa; Hikaru Suenaga; Masatoshi Goto
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

5.  A Continuing Career in Biocatalysis: Frances H. Arnold.

Authors:  Rudi Fasan; S B Jennifer Kan; Huimin Zhao
Journal:  ACS Catal       Date:  2019-09-17       Impact factor: 13.084

6.  An improved PCR-mutagenesis strategy for two-site mutagenesis or sequence swapping between related genes.

Authors:  R D Kirsch; E Joly
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

Review 7.  Improving industrial yeast strains: exploiting natural and artificial diversity.

Authors:  Jan Steensels; Tim Snoek; Esther Meersman; Martina Picca Nicolino; Karin Voordeckers; Kevin J Verstrepen
Journal:  FEMS Microbiol Rev       Date:  2014-05-08       Impact factor: 16.408

8.  Improving low-temperature activity of Sulfolobus acidocaldarius 2-keto-3-deoxygluconate aldolase.

Authors:  Suzanne Wolterink-van Loo; Marco A J Siemerink; Georgios Perrakis; Thijs Kaper; Servé W M Kengen; John van der Oost
Journal:  Archaea       Date:  2009-03-02       Impact factor: 3.273

9.  Nucleotide exchange and excision technology (NExT) DNA shuffling: a robust method for DNA fragmentation and directed evolution.

Authors:  Kristian M Müller; Sabine C Stebel; Susanne Knall; Gregor Zipf; Hubert S Bernauer; Katja M Arndt
Journal:  Nucleic Acids Res       Date:  2005-08-01       Impact factor: 16.971

10.  Biotechnology of cold-active proteases.

Authors:  Swati Joshi; Tulasi Satyanarayana
Journal:  Biology (Basel)       Date:  2013-05-03
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