Literature DB >> 9417937

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

H Gu1, D Kim, D Baker.   

Abstract

To investigate the role of turns in protein folding, we have characterized the effects of combinatorial and site-directed mutations in the two beta-turns of peptostreptococcal protein L on folding thermodynamics and kinetics. Sequences of folded variants recovered from combinatorial libraries using a phase display selection method were considerably more variable in the second turn than in the first turn. These combinatorial mutants as well as strategically placed point mutants in the two turns had a similar range of thermodynamic stabilities, but strikingly different folding kinetics. A glycine to alanine substitution in the second beta-turn increased the rate of unfolding more than tenfold but had little effect on the rate of folding, while mutation of a symmetrically disposed glycine residue in the first turn had little effect on unfolding but slowed the rate of folding nearly tenfold. These results demonstrate that the role of beta-turns in protein folding is strongly context-dependent, and suggests that the first turn is formed and the second turn disrupted in the folding transition state.

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Year:  1997        PMID: 9417937     DOI: 10.1006/jmbi.1997.1374

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  23 in total

1.  Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.

Authors:  L B Moran; J P Schneider; A Kentsis; G A Reddy; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

Review 2.  The hydrogen exchange core and protein folding.

Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

3.  Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Authors:  E Alm; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

4.  Robustness of protein folding kinetics to surface hydrophobic substitutions.

Authors:  H Gu; N Doshi; D E Kim; K T Simons; J V Santiago; S Nauli; D Baker
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Turn scanning by site-directed mutagenesis: application to the protein folding problem using the intestinal fatty acid binding protein.

Authors:  K Kim; C Frieden
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

6.  The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?

Authors:  John Karanicolas; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

7.  Turn stability in beta-hairpin peptides: Investigation of peptides containing 3:5 type I G1 bulge turns.

Authors:  Tamas Blandl; Andrea G Cochran; Nicholas J Skelton
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

8.  Coarse-grained sequences for protein folding and design.

Authors:  Scott Brown; Nicolas J Fawzi; Teresa Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

9.  The origins of asymmetry in the folding transition states of protein L and protein G.

Authors:  John Karanicolas; Charles L Brooks
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

10.  Modulation of zinc- and cobalt-binding affinities through changes in the stability of the zinc ribbon protein L36.

Authors:  Wenpeng Kou; Harsha S Kolla; Alfonso Ortiz-Acevedo; Donovan C Haines; Matthew Junker; Gregg R Dieckmann
Journal:  J Biol Inorg Chem       Date:  2005-03-04       Impact factor: 3.358

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