Literature DB >> 9405933

Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?

P Guerdoux-Jamet1, A Hénaut, P Nitschké, J L Risler, A Danchin.   

Abstract

Analysis of the codon usage of genes coding for the structural components of the outer membrane in Escherichia coli, is consistent with the requirement for high expression of these genes. Because porins (which constitute the major protein component of the outer membrane), and LPS (which constitute the major outermost constituent of the outer membrane), are synthesized from genes displaying widely different codon usage, it is possible to investigate the origin of the outer membrane. The analysis predicts that the outer membrane might originate from a genome other than the genome coding for the major part of the cell. Such a special origin would explain in structural terms, the likely lethality of porins if they were inadvertently inserted within the inner membrane, giving rise to the Gram-negative bacterial type, having an envelope comprising two membranes, instead of a single cytoplasmic membrane and a murein sacculus.

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Year:  1997        PMID: 9405933     DOI: 10.1093/dnares/4.4.257

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  6 in total

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3.  Molecular archaeology of the Escherichia coli genome.

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4.  Codon usage domains over bacterial chromosomes.

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Review 5.  Bacteria as computers making computers.

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6.  Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits.

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  6 in total

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