Literature DB >> 9399830

Database on the structure of large ribosomal subunit RNA.

P De Rijk1, A Caers, Y Van de Peer, R De Wachter.   

Abstract

The rRNA WWW Server at URL http://rrna.uia.ac.be/ now provides a database of 496 large subunit ribosomal RNA sequences. All these sequences are aligned, incorporate secondary structure information, and can be obtained in a number of formats. Other information about the sequences, such as literature references, accession numbers and taxonomic information is also available and searchable. If necessary, the data on the server can also be obtained by anonymous ftp.

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Year:  1998        PMID: 9399830      PMCID: PMC147202          DOI: 10.1093/nar/26.1.183

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

Review 1.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

2.  DCSE, an interactive tool for sequence alignment and secondary structure research.

Authors:  P De Rijk; R De Wachter
Journal:  Comput Appl Biosci       Date:  1993-12

3.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

Review 4.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

Review 5.  Ribosomal RNA: a key to phylogeny.

Authors:  G J Olsen; C R Woese
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

Review 6.  The winds of (evolutionary) change: breathing new life into microbiology.

Authors:  G J Olsen; C R Woese; R Overbeek
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

7.  A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993.

Authors:  R R Gutell; M W Gray; M N Schnare
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

8.  Compilation of small ribosomal subunit RNA structures.

Authors:  J M Neefs; Y Van de Peer; P De Rijk; S Chapelle; R De Wachter
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

9.  Secondary structure model for 23S ribosomal RNA.

Authors:  H F Noller; J Kop; V Wheaton; J Brosius; R R Gutell; A M Kopylov; F Dohme; W Herr; D A Stahl; R Gupta; C R Waese
Journal:  Nucleic Acids Res       Date:  1981-11-25       Impact factor: 16.971

10.  Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

Authors:  H Leffers; J Kjems; L Ostergaard; N Larsen; R A Garrett
Journal:  J Mol Biol       Date:  1987-05-05       Impact factor: 5.469

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  7 in total

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Authors:  K Saitoh; T Sado; R L Mayden; N Hanzawa; K Nakamura; M Nishida; M Miya
Journal:  J Mol Evol       Date:  2006-11-02       Impact factor: 2.395

2.  Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.

Authors:  Samuel Mwangangi Muturi; Lucy Wangui Muthui; Paul Mwangi Njogu; Justus Mong'are Onguso; Francis Nyamu Wachira; Stephen Obol Opiyo; Roger Pelle
Journal:  PLoS One       Date:  2021-01-04       Impact factor: 3.240

3.  Evolutionary modeling and prediction of non-coding RNAs in Drosophila.

Authors:  Robert K Bradley; Andrew V Uzilov; Mitchell E Skinner; Yuri R Bendaña; Lars Barquist; Ian Holmes
Journal:  PLoS One       Date:  2009-08-11       Impact factor: 3.240

4.  Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core.

Authors:  E Peyretaillade; C Biderre; P Peyret; F Duffieux; G Méténier; M Gouy; B Michot; C P Vivarès
Journal:  Nucleic Acids Res       Date:  1998-08-01       Impact factor: 16.971

5.  Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.

Authors:  J J Gillespie; J S Johnston; J J Cannone; R R Gutell
Journal:  Insect Mol Biol       Date:  2006-10       Impact factor: 3.585

6.  Evolutionary triplet models of structured RNA.

Authors:  Robert K Bradley; Ian Holmes
Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

7.  Tools for simulating evolution of aligned genomic regions with integrated parameter estimation.

Authors:  Avinash Varadarajan; Robert K Bradley; Ian H Holmes
Journal:  Genome Biol       Date:  2008-10-08       Impact factor: 13.583

  7 in total

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