Literature DB >> 9399823

Small RNA database.

J Gu1, Y Chen, R Reddy.   

Abstract

The small RNA database is a compilation of all the small size RNA sequences available to date, including nuclear, nucleolar, cytoplasmic and mitochondria small RNAs from eukaryotic organisms and small RNAs from prokaryotic cells as well as viruses. Currently, approximately 600 small RNA sequences are in our database. It also gives the sources of individual RNAs and their GenBank accession numbers. The small RNA database can be accessed through the WWW (World Wide Web). Our WWW URL address is: http://mbcr.bcm.tmc. edu/smallRNA/smallrna.html . The new small RNA sequences published since our last compilation are listed in this paper (Table 1).

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Year:  1998        PMID: 9399823      PMCID: PMC147212          DOI: 10.1093/nar/26.1.160

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Compilation of small RNA sequences.

Authors:  G Shumyatsky; R Reddy
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

2.  Compilation of small RNA sequences.

Authors:  S Gupta; R Reddy
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

3.  Compilation of small RNA sequences.

Authors:  J Gu; R Reddy
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

4.  Compilation of small RNA sequences.

Authors:  G Shumyatsky; R Reddy
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

5.  U14 snoRNAs are encoded in introns of human ribosomal protein S13 gene.

Authors:  N Kenmochi; S Higa; M Yoshihama; T Tanaka
Journal:  Biochem Biophys Res Commun       Date:  1996-11-12       Impact factor: 3.575

6.  Compilation of small RNA sequences.

Authors:  R Reddy
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

7.  A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus.

Authors:  K T Tycowski; C M Smith; M D Shu; J A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

8.  Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6.

Authors:  A D Farris; J K Gross; J S Hanas; J B Harley
Journal:  Gene       Date:  1996-09-26       Impact factor: 3.688

9.  Identification and analysis of the u6 small nuclear RNA gene from Entamoeba histolytica.

Authors:  R Miranda; L M Salgado; R Sánchez-López; A Alagón; P M Lizardi
Journal:  Gene       Date:  1996-11-21       Impact factor: 3.688

10.  U24, a novel intron-encoded small nucleolar RNA with two 12 nt long, phylogenetically conserved complementarities to 28S rRNA.

Authors:  L H Qu; Y Henry; M Nicoloso; B Michot; M C Azum; M H Renalier; M Caizergues-Ferrer; J P Bachellerie
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

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  6 in total

1.  Multiple functions for the invariant AGC triad of U6 snRNA.

Authors:  Angela K Hilliker; Jonathan P Staley
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

2.  Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA.

Authors:  Y Zebarjadian; T King; M J Fournier; L Clarke; J Carbon
Journal:  Mol Cell Biol       Date:  1999-11       Impact factor: 4.272

3.  U1 small nuclear RNA and spliceosomal introns in Euglena gracilis.

Authors:  D G Breckenridge; Y Watanabe; S J Greenwood; M W Gray; M N Schnare
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-02       Impact factor: 11.205

4.  A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli.

Authors:  S Raychaudhuri; J Conrad; B G Hall; J Ofengand
Journal:  RNA       Date:  1998-11       Impact factor: 4.942

5.  NONCODE: an integrated knowledge database of non-coding RNAs.

Authors:  Changning Liu; Baoyan Bai; Geir Skogerbø; Lun Cai; Wei Deng; Yong Zhang; Dongbo Bu; Yi Zhao; Runsheng Chen
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

6.  A phylogenetic study of Drosophila splicing assembly chaperone RNP-4F associated U4-/U6-snRNA secondary structure.

Authors:  Jack C Vaughn; Sushmita Ghosh; Jing Chen
Journal:  Open J Anim Sci       Date:  2013-11
  6 in total

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