Literature DB >> 9399822

5S rRNA Data Bank.

M Szymanski1, T Specht, M Z Barciszewska, J Barciszewski, V A Erdmann.   

Abstract

In this paper we present the updated version of the compilation of 5S rRNA and 5S rDNA nucleotide sequences. It contains 1622 primary structures of 5S rRNAs and 5S rRNA genes from 888 species. These include 58 archaeal, 427 eubacterial, 34 plastid, nine mitochondrial and 1094 eukaryotic DNA or RNA nucleotide sequences. The sequence entries are divided according to the taxonomic position of the organisms. All individual sequences deposited in the 5S rRNA Database can be retrieved using the WWW-based, taxonomic browser at http://rose.man.poznan.pl/5SData/5SRNA.html++ + or http://www.chemie. fu-berlin.de/fb_chemie/agerdmann/5S_rRNA.html . The files with complete sets of data as well as sequence alignments are available via anonymous ftp.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9399822      PMCID: PMC147219          DOI: 10.1093/nar/26.1.156

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  [Apropos of the presence of weak molecular weight RNA in the ribosomes of Escherichia Coli].

Authors:  R ROSSET; R MONIER
Journal:  Biochim Biophys Acta       Date:  1963-04-30

2.  Compilation of ribosomal 5S ribonucleic acid nucleotide sequences: eukaryotic 5S rRNAs.

Authors:  M Szymański; M Z Barciszewska; J Barciszewski; T Specht; V A Erdmann
Journal:  Biochim Biophys Acta       Date:  1997-01-03

3.  Compilation of 5S rRNA and 5S rRNA gene sequences.

Authors:  T Specht; M Szymanski; M Z Barciszewska; J Barciszewski; V A Erdmann
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

4.  Isolation and characterization of 5S RNA-protein complexes from Bacillus stearothermophilus and Escherichia coli ribosomes.

Authors:  J R Horne; V A Erdmann
Journal:  Mol Gen Genet       Date:  1972

5.  Nucleotide sequence of 5S-ribosomal RNA from Escherichia coli.

Authors:  G G Brownlee; F Sanger; B G Barrell
Journal:  Nature       Date:  1967-08-12       Impact factor: 49.962

6.  Crystallization and preliminary diffraction studies of the structural domain E of Thermus flavus 5S rRNA.

Authors:  A Nolte; S Klussman; S Lorenz; R Bald; C Betzel; Z Dauter; K Wilson; J P Fürste; V A Erdmann
Journal:  FEBS Lett       Date:  1995-10-30       Impact factor: 4.124

Review 7.  Ribosomal 5S RNA: tertiary structure and interactions with proteins.

Authors:  M Z Barciszewska; V A Erdmann; J Barciszewski
Journal:  Biol Rev Camb Philos Soc       Date:  1996-02

8.  Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure.

Authors:  C Betzel; S Lorenz; J P Fürste; R Bald; M Zhang; T R Schneider; K S Wilson; V A Erdmann
Journal:  FEBS Lett       Date:  1994-09-05       Impact factor: 4.124

  8 in total
  20 in total

1.  Cross talk between tRNA and rRNA synthesis in Saccharomyces cerevisiae.

Authors:  J F Briand; F Navarro; O Gadal; P Thuriaux
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

2.  TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.

Authors:  Matthew G Seetin; David H Mathews
Journal:  Bioinformatics       Date:  2012-01-27       Impact factor: 6.937

3.  ProbKnot: fast prediction of RNA secondary structure including pseudoknots.

Authors:  Stanislav Bellaousov; David H Mathews
Journal:  RNA       Date:  2010-08-10       Impact factor: 4.942

4.  Thermodynamic characterization of naturally occurring RNA tetraloops.

Authors:  Justin P Sheehy; Amber R Davis; Brent M Znosko
Journal:  RNA       Date:  2010-01-04       Impact factor: 4.942

5.  Improved RNA secondary structure prediction by maximizing expected pair accuracy.

Authors:  Zhi John Lu; Jason W Gloor; David H Mathews
Journal:  RNA       Date:  2009-08-24       Impact factor: 4.942

6.  The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.

Authors:  N B Leontis; E Westhof
Journal:  RNA       Date:  1998-09       Impact factor: 4.942

7.  Two classes of 5S rDNA unit arrays of the silver fir, Abies alba Mill.: structure, localization and evolution.

Authors:  Visnja Besendorfer; Iva Krajacić-Sokol; Srećko Jelenić; Jasna Puizina; Jelena Mlinarec; Tonka Sviben; Drazena Papes
Journal:  Theor Appl Genet       Date:  2005-01-19       Impact factor: 5.699

8.  Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond.

Authors:  Y Ding; C E Lawrence
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

9.  Thermodynamic characterization of RNA triloops.

Authors:  Praneetha Thulasi; Lopa K Pandya; Brent M Znosko
Journal:  Biochemistry       Date:  2010-10-26       Impact factor: 3.162

10.  Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.

Authors:  Amy M Ruschak; David H Mathews; Arkadiusz Bibillo; Sherry L Spinelli; Jessica L Childs; Thomas H Eickbush; Douglas H Turner
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.