Literature DB >> 9390316

TRANSFAC database as a bridge between sequence data libraries and biological function.

E Wingender1, H Karas, R Knüppel.   

Abstract

The TRANSFAC database contains information about regulatory DNA sequences and the proteins (transcription factors) binding to and acting through them. It may thus serve as a dictionary for the biological meaning of these sequence elements. Moreover, the TRANSFAC data can be used to describe these elements, to define consensi and matrices for elements of certain function, and thus to provide means of identifying regulatory signals in newly unravelled genomic sequences.

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Year:  1997        PMID： 9390316

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN： 2335-6928


  15 in total

1.  The TRANSFAC system on gene expression regulation.

Authors:  E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure.

Authors:  I Ioshikhes; E N Trifonov; M Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  miR-483 Targeting of CTGF Suppresses Endothelial-to-Mesenchymal Transition: Therapeutic Implications in Kawasaki Disease.

Authors:  Ming He; Zhen Chen; Marcy Martin; Jin Zhang; Panjamaporn Sangwung; Brian Woo; Adriana H Tremoulet; Chisato Shimizu; Mukesh K Jain; Jane C Burns; John Y-J Shyy
Journal:  Circ Res       Date:  2016-12-06       Impact factor: 17.367

4.  Sterol regulatory element binding protein 2 activation of NLRP3 inflammasome in endothelium mediates hemodynamic-induced atherosclerosis susceptibility.

Authors:  Han Xiao; Min Lu; Ting Yang Lin; Zhen Chen; Gang Chen; Wei-Chi Wang; Traci Marin; Tzu-Pin Shentu; Liang Wen; Brendan Gongol; Wei Sun; Xiao Liang; Ju Chen; Hsien-Da Huang; Joao H F Pedra; David A Johnson; John Y J Shyy
Journal:  Circulation       Date:  2013-07-09       Impact factor: 29.690

5.  MiR-148a promotes apoptosis by targeting Bcl-2 in colorectal cancer.

Authors:  H Zhang; Y Li; Q Huang; X Ren; H Hu; H Sheng; M Lai
Journal:  Cell Death Differ       Date:  2011-04-01       Impact factor: 15.828

6.  Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.

Authors:  Martha L Bulyk; Philip L F Johnson; George M Church
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

7.  Hypoxia-responsive miRNAs target argonaute 1 to promote angiogenesis.

Authors:  Zhen Chen; Tsung-Ching Lai; Yi-Hua Jan; Feng-Mao Lin; Wei-Chi Wang; Han Xiao; Yun-Ting Wang; Wei Sun; Xiaopei Cui; Ying-Shiuan Li; Tzan Fang; Hongwei Zhao; Chellappan Padmanabhan; Ruobai Sun; Danny Ling Wang; Hailing Jin; Gar-Yang Chau; Hsien-Da Huang; Michael Hsiao; John Y-J Shyy
Journal:  J Clin Invest       Date:  2013-02-15       Impact factor: 14.808

8.  Identification of a minimal cis-element and cognate trans-factor(s) required for induction of Rac2 gene expression during K562 cell differentiation.

Authors:  Rajarajeswari Muthukrishnan; David G Skalnik
Journal:  Gene       Date:  2009-04-17       Impact factor: 3.688

9.  PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.

Authors:  Wen-Chi Chang; Tzong-Yi Lee; Hsien-Da Huang; His-Yuan Huang; Rong-Long Pan
Journal:  BMC Genomics       Date:  2008-11-26       Impact factor: 3.969

10.  Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks.

Authors:  Feng Tian; Parantu K Shah; Xiangjun Liu; Nicolas Negre; Jia Chen; Oleksiy Karpenko; Kevin P White; Robert L Grossman
Journal:  Bioinformatics       Date:  2009-08-05       Impact factor: 6.937
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