Literature DB >> 9376358

Identification of the predominant non-native histidine ligand in unfolded cytochrome c.

W Colón1, L P Wakem, F Sherman, H Roder.   

Abstract

The heme and its two axial ligands, His18 and Met80, play a central role in the folding/unfolding mechanism of cytochrome c. Because of the covalent heme attachment, His18 remains bound under typical denaturing conditions, while the more labile Met80 ligand is replaced by an alternate histidine ligand. To distinguish between the two possible non-native histidine ligands in horse cytochrome c, variants with a His26 to Gln or His33 to Asn substitution were prepared using a yeast expression system. Protonation of the non-native histidine ligand in the GuHCl-denatured state results in a pronounced blue shift of the Soret heme absorbance band (low-spin to high-spin transition). While substitution of His26 has no effect on the apparent pKa of this transition (5.7 +/- 0.05), the H33N variant exhibits a substantially higher pKa (6.1 +/- 0.05), indicating that His33 is the dominant sixth heme ligand in denatured cytochrome c and that His26 (or another nitrogenous group) acts as a ligand in the absence of a histidine at position 33. The kinetics of the pH-induced ligand dissociation shows two phases which were assigned to each of the two histidine ligands on the basis of their distinct temperature dependence. Despite their nearly identical equilibrium unfolding transitions, the two histidine mutants show differences in their folding kinetics. While the kinetic behavior of H26Q cyt c is very similar to that of the wild-type, the H33N mutation leads to loss of a kinetic phase with a rate in the 2-10 s-1 range that has previously been attributed to the rate-limiting dissociation of a trapped non-native histidine, which is thus identified as His33.

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Year:  1997        PMID: 9376358     DOI: 10.1021/bi971697c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  33 in total

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Authors:  M Panda; M G Benavides-Garcia; M M Pierce; B T Nall
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2.  Multiple pathways on a protein-folding energy landscape: kinetic evidence.

Authors:  R A Goldbeck; Y G Thomas; E Chen; R M Esquerra; D S Kliger
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3.  Unfolding and refolding of cytochrome c driven by the interaction with lipid micelles.

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Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

4.  NMR investigation of ferricytochrome c unfolding: detection of an equilibrium unfolding intermediate and residual structure in the denatured state.

Authors:  B S Russell; R Melenkivitz; K L Bren
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

5.  Viewing protein folding from many perspectives.

Authors:  Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

6.  Structure-function relationship of reduced cytochrome c probed by complete solution structure determination in 30% acetonitrile/water solution.

Authors:  Sivashankar G Sivakolundu; Patricia Ann Mabrouk
Journal:  J Biol Inorg Chem       Date:  2003-02-15       Impact factor: 3.358

7.  Role of protein stabilizers on the conformation of the unfolded state of cytochrome c and its early folding kinetics: investigation at single molecular resolution.

Authors:  Shubhasis Haldar; Samaresh Mitra; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

Review 8.  Early events in protein folding explored by rapid mixing methods.

Authors:  Heinrich Roder; Kosuke Maki; Hong Cheng
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

9.  A tightly packed hydrophobic cluster directs the formation of an off-pathway sub-millisecond folding intermediate in the alpha subunit of tryptophan synthase, a TIM barrel protein.

Authors:  Ying Wu; Ramakrishna Vadrevu; Sagar Kathuria; Xiaoyan Yang; C Robert Matthews
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

10.  The K79G Mutation Reshapes the Heme Crevice and Alters Redox Properties of Cytochrome c.

Authors:  Yunling Deng; Fangfang Zhong; Stephanie L Alden; Kevin R Hoke; Ekaterina V Pletneva
Journal:  Biochemistry       Date:  2018-09-24       Impact factor: 3.162

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