Literature DB >> 9367131

PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.

N C Grassly1, J Adachi, A Rambaut.   

Abstract

Mesh:

Year:  1997        PMID: 9367131     DOI: 10.1093/bioinformatics/13.5.559

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


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  16 in total

1.  Finding important sites in protein sequences.

Authors:  Peter J Bickel; Katherina J Kechris; Philip C Spector; Gary J Wedemayer; Alexander N Glazer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-04       Impact factor: 11.205

2.  Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.

Authors:  Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

3.  The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?

Authors:  Emmanuel J P Douzery; Elizabeth A Snell; Eric Bapteste; Frédéric Delsuc; Hervé Philippe
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-19       Impact factor: 11.205

4.  Divergent evolution within protein superfolds inferred from profile-based phylogenetics.

Authors:  Douglas L Theobald; Deborah S Wuttke
Journal:  J Mol Biol       Date:  2005-09-20       Impact factor: 5.469

5.  Natural selection interacts with recombination to shape the evolution of hybrid genomes.

Authors:  Molly Schumer; Chenling Xu; Daniel L Powell; Arun Durvasula; Laurits Skov; Chris Holland; John C Blazier; Sriram Sankararaman; Peter Andolfatto; Gil G Rosenthal; Molly Przeworski
Journal:  Science       Date:  2018-04-19       Impact factor: 47.728

6.  Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria.

Authors:  Yuji Inagaki; Christian Blouin; Edward Susko; Andrew J Roger
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

7.  ALF--a simulation framework for genome evolution.

Authors:  Daniel A Dalquen; Maria Anisimova; Gaston H Gonnet; Christophe Dessimoz
Journal:  Mol Biol Evol       Date:  2011-12-08       Impact factor: 16.240

8.  PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.

Authors:  Gaurav Bhardwaj; Kyung Dae Ko; Yoojin Hong; Zhenhai Zhang; Ngai Lam Ho; Sree V Chintapalli; Lindsay A Kline; Matthew Gotlin; David Nicholas Hartranft; Morgen E Patterson; Foram Dave; Evan J Smith; Edward C Holmes; Randen L Patterson; Damian B van Rossum
Journal:  PLoS One       Date:  2012-04-13       Impact factor: 3.240

9.  Phylogenomic analysis reveals extensive phylogenetic mosaicism in the human GPCR superfamily.

Authors:  Robin G Allaby; Mathew Woodwark
Journal:  Evol Bioinform Online       Date:  2007-09-26       Impact factor: 1.625

10.  Mlcoalsim: multilocus coalescent simulations.

Authors:  Sebastian E Ramos-Onsins; Thomas Mitchell-Olds
Journal:  Evol Bioinform Online       Date:  2007-03-02       Impact factor: 1.625

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