Literature DB >> 9359093

The challenges of genome sequence annotation or "the devil is in the details".

T F Smith1, X Zhang.   

Abstract

Mesh:

Year:  1997        PMID: 9359093     DOI: 10.1038/nbt1197-1222

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  17 in total

Review 1.  PROTEAN. Protein sequence analysis and prediction.

Authors:  T N Plasterer
Journal:  Mol Biotechnol       Date:  2000-10       Impact factor: 2.695

2.  Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes.

Authors:  I Yanai; A Derti; C DeLisi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

3.  An efficient algorithm for large-scale detection of protein families.

Authors:  A J Enright; S Van Dongen; C A Ouzounis
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

4.  Predicting ligand-binding function in families of bacterial receptors.

Authors:  J M Johnson; G M Church
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

Review 5.  The past, present and future of genome-wide re-annotation.

Authors:  Christos A Ouzounis; Peter D Karp
Journal:  Genome Biol       Date:  2002-01-31       Impact factor: 13.583

6.  Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites.

Authors:  Joel H Graber; Gregory D McAllister; Temple F Smith
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

7.  Visualizing sequence similarity of protein families.

Authors:  Vamsi Veeramachaneni; Wojciech Makałowski
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

8.  Seq2Ref: a web server to facilitate functional interpretation.

Authors:  Wenlin Li; Qian Cong; Lisa N Kinch; Nick V Grishin
Journal:  BMC Bioinformatics       Date:  2013-01-28       Impact factor: 3.169

Review 9.  What we can learn about Escherichia coli through application of Gene Ontology.

Authors:  James C Hu; Peter D Karp; Ingrid M Keseler; Markus Krummenacker; Deborah A Siegele
Journal:  Trends Microbiol       Date:  2009-07-01       Impact factor: 17.079

10.  The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.

Authors: 
Journal:  PLoS Comput Biol       Date:  2009-07-03       Impact factor: 4.475

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