Literature DB >> 9344735

Theoretical description of the polymerase chain reaction.

S Schnell1, C Mendoza.   

Abstract

Taking into account expressions for the efficiency of the polymerase chain reaction (PCR) recently deduced from enzymological considerations, and making use of a continuous model based on the law of mass action, closed form solutions are derived that enable a complete description of the standard and quantitative competitive PCR methods. The resulting behaviour is in reasonable agreement with that from a previous, empirical, discrete approach; but the latter is nonetheless shown to overestimate the amplification yield by as much as 30% due to the weak assumption of a constant efficiency during the cycle duration. The present formalism will facilitate the implementation of accurate fitting procedures of experimental data to manage quantification. Copyright 1997 Academic Press Limited.

Mesh:

Substances:

Year:  1997        PMID: 9344735     DOI: 10.1006/jtbi.1997.0473

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  11 in total

1.  Basic principles of quantitative PCR.

Authors:  L Raeymaekers
Journal:  Mol Biotechnol       Date:  2000-06       Impact factor: 2.695

Review 2.  Specificity and performance of PCR detection assays for microbial pathogens.

Authors:  Konrad Sachse
Journal:  Mol Biotechnol       Date:  2004-01       Impact factor: 2.695

3.  Standardized determination of real-time PCR efficiency from a single reaction set-up.

Authors:  Ales Tichopad; Michael Dilger; Gerhard Schwarz; Michael W Pfaffl
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

4.  Experimental Validation of a Fundamental Model for PCR Efficiency.

Authors:  Tobias M Louw; Christine S Booth; Elsje Pienaar; Joel R Termaat; Scott E Whitney; Hendrik J Viljoen
Journal:  Chem Eng Sci       Date:  2011-04-15       Impact factor: 4.311

5.  Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays.

Authors:  Oleg Paliy; Brent D Foy
Journal:  Bioinformatics       Date:  2011-06-07       Impact factor: 6.937

6.  Modeling qRT-PCR dynamics with application to cancer biomarker quantification.

Authors:  Inna Chervoneva; Boris Freydin; Terry Hyslop; Scott A Waldman
Journal:  Stat Methods Med Res       Date:  2017-05-14       Impact factor: 3.021

7.  Optimizing enzymatic catalysts for rapid turnover of substrates with low enzyme sequestration.

Authors:  Abhishek Deshpande; Thomas E Ouldridge
Journal:  Biol Cybern       Date:  2020-10-12       Impact factor: 2.086

8.  Efficiency of the Polymerase Chain Reaction.

Authors:  Christine S Booth; Elsje Pienaar; Joel R Termaat; Scott E Whitney; Tobias M Louw; Hendrik J Viljoen
Journal:  Chem Eng Sci       Date:  2010-09-01       Impact factor: 4.311

9.  Allele intersection analysis: a novel tool for multi locus sequence assignment in multiply infected hosts.

Authors:  Wolfgang Arthofer; Markus Riegler; Hannes Schuler; Daniela Schneider; Karl Moder; Wolfgang J Miller; Christian Stauffer
Journal:  PLoS One       Date:  2011-07-15       Impact factor: 3.240

10.  Simulation of between repeat variability in real time PCR reactions.

Authors:  Antoon Lievens; Stefan Van Aelst; Marc Van den Bulcke; Els Goetghebeur
Journal:  PLoS One       Date:  2012-11-26       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.