Literature DB >> 9331373

IMAGE cDNA clones, UniGene clustering, and ACeDB: an integrated resource for expressed sequence information.

G Miller1, R Fuchs, E Lai.   

Abstract

In this study we describe a new information resource that provides integrated access to information on IMAGE (integrated molecular analysis of genomes and their expression) cDNA library clones and derived expressed sequence tags (ESTs). We have developed an automated procedure that collates data from various public sources into a single ACeDB database. This database is a valuable tool for electronic cloning experiments and gene expression studies. It allows researchers to find information about cDNA libraries, plate addresses, insert sizes, and sequence data for IMAGE clones, the assignment of ESTs to UniGene clusters, and the chromosomal location of those genes in an efficient, graphically oriented manner.

Mesh:

Substances:

Year:  1997        PMID: 9331373      PMCID: PMC310673          DOI: 10.1101/gr.7.10.1027

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  14 in total

1.  Complementary DNA sequencing: expressed sequence tags and human genome project.

Authors:  M D Adams; J M Kelley; J D Gocayne; M Dubnick; M H Polymeropoulos; H Xiao; C R Merril; A Wu; B Olde; R F Moreno
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

2.  ESTablishing a human transcript map.

Authors:  M S Boguski; G D Schuler
Journal:  Nat Genet       Date:  1995-08       Impact factor: 38.330

3.  Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence.

Authors:  M D Adams; A R Kerlavage; R D Fleischmann; R A Fuldner; C J Bult; N H Lee; E F Kirkness; K G Weinstock; J D Gocayne; O White
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

4.  dbEST--database for "expressed sequence tags".

Authors:  M S Boguski; T M Lowe; C M Tolstoshev
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

5.  The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression.

Authors:  G Lennon; C Auffray; M Polymeropoulos; M B Soares
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

6.  Improvements to the GDB Human Genome Data Base.

Authors:  K H Fasman; S I Letovsky; R W Cottingham; D T Kingsbury
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

7.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

Review 8.  ACeDB and macace.

Authors:  F H Eeckman; R Durbin
Journal:  Methods Cell Biol       Date:  1995       Impact factor: 1.441

9.  Gene expression in rat brain.

Authors:  R J Milner; J G Sutcliffe
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971

10.  A new troponin T and cDNA clones for 13 different muscle proteins, found by shotgun sequencing.

Authors:  S D Putney; W C Herlihy; P Schimmel
Journal:  Nature       Date:  1983-04-21       Impact factor: 49.962

View more
  8 in total

Review 1.  The Eyes Absent proteins in development and disease.

Authors:  Emmanuel Tadjuidje; Rashmi S Hegde
Journal:  Cell Mol Life Sci       Date:  2012-09-13       Impact factor: 9.261

2.  Strategies for enhanced annotation of a microarray probe set.

Authors:  Tushun R Powers; Selene M Virk; Elba E Serrano
Journal:  Int J Bioinform Res Appl       Date:  2010

3.  A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

Authors:  I Abdrakhmanov; D Lodygin; P Geroth; H Arakawa; A Law; J Plachy; B Korn; J M Buerstedde
Journal:  Genome Res       Date:  2000-12       Impact factor: 9.043

4.  Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics.

Authors:  C H Lai; C Y Chou; L Y Ch'ang; C S Liu; W Lin
Journal:  Genome Res       Date:  2000-05       Impact factor: 9.043

5.  Quantitative gene expression profiles in real time from expressed sequence tag databases.

Authors:  Vincent A Funari; Konstantin Voevodski; Dimitry Leyfer; Laura Yerkes; Donald Cramer; Dean R Tolan
Journal:  Gene Expr       Date:  2010

6.  EYA1 expression in gastric carcinoma and its association with clinicopathological characteristics: a pilot study.

Authors:  Parvaneh Nikpour; Modjtaba Emadi-Baygi; Elaheh Emadi-Andani; Shima Rahmati
Journal:  Med Oncol       Date:  2014-04-12       Impact factor: 3.064

7.  Radiation-induced biomarkers for the detection and assessment of absorbed radiation doses.

Authors:  Sudha Rana; Raj Kumar; Sarwat Sultana; Rakesh Kumar Sharma
Journal:  J Pharm Bioallied Sci       Date:  2010-07

8.  A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Authors:  Roberta Alfieri; Ivan Merelli; Ettore Mosca; Luciano Milanesi
Journal:  BMC Syst Biol       Date:  2007-08-01
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.