Literature DB >> 9299517

Activation of adenylate kinase by denaturants is due to the increasing conformational flexibility at its active sites.

H J Zhang1, X R Sheng, X M Pan, J M Zhou.   

Abstract

The unfolding of adenylate kinase in urea or guanidine hydrochloride solutions was measured by UV absorbance at 287 nm, circular dichroism at 222 nm and 8-anilino-1-naphthalenesulfonic acid (ANS) fluorescence. At concentrations less than 1.8 M of urea, the secondary and tertiary structures of AK were not noticeably perturbed. In contrast, the activity of the enzyme underwent significant changes, increasing about 1.6-fold when the urea concentration was increased to 1 M. The enzyme activity then decreased with further increases of the urea concentration. We also observed that the kinetics of ANS binding to AK by fluorescence was biphasic. The fast phase completed within the dead-time of the stopped-flow apparatus used, while the slow phase ended in about 10 minutes. The slow phase fluorescence rate constants increased from 0.0073 s-1 in the absence of denaturants to 0.0100 s-1 (about 1.4-fold) at 1 M urea and then decreased at higher urea concentrations. Similar results were obtained when guanidine hydrochloride was used as a denaturant. The change of the enzyme activity coincided with that of the rate of ANS binding during denaturation by low concentration of denaturants, suggesting that the activation of AK by denaturants may be due to the increasing conformational flexibility at its active site. Copyright 1997 Academic Press.

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Year:  1997        PMID: 9299517     DOI: 10.1006/bbrc.1997.7301

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  15 in total

1.  Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.

Authors:  O Miyashita; J N Onuchic; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

2.  Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.

Authors:  N Alpay Temiz; Eva Meirovitch; Ivet Bahar
Journal:  Proteins       Date:  2004-11-15

3.  Exploring biomolecular machines: energy landscape control of biological reactions.

Authors:  José N Onuchic; Chigusa Kobayashi; Osamu Miyashita; Patricia Jennings; Kim K Baldridge
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

4.  Roles of static and dynamic domains in stability and catalysis of adenylate kinase.

Authors:  Euiyoung Bae; George N Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-01       Impact factor: 11.205

5.  Energy landscape along an enzymatic reaction trajectory: hinges or cracks?

Authors:  Paul Charles Whitford; José Nelson Onuchic; Peter Guy Wolynes
Journal:  HFSP J       Date:  2008-03-24

6.  On the role of frustration in the energy landscapes of allosteric proteins.

Authors:  Diego U Ferreiro; Joseph A Hegler; Elizabeth A Komives; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-27       Impact factor: 11.205

7.  Conformational plasticity surrounding the active site of NADH oxidase from Thermus thermophilus.

Authors:  Teresa Miletti; Justin Di Trani; Louis-Charles Levros; Anthony Mittermaier
Journal:  Protein Sci       Date:  2015-05-29       Impact factor: 6.725

8.  Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  Julie Bonvin; Raphael A Aponte; Maria Marcantonio; Sasha Singh; Dinesh Christendat; Joanne L Turnbull
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

9.  Allosteric control in a metalloprotein dramatically alters function.

Authors:  Elizabeth Leigh Baxter; John A Zuris; Charles Wang; Phu Luong T Vo; Herbert L Axelrod; Aina E Cohen; Mark L Paddock; Rachel Nechushtai; Jose N Onuchic; Patricia A Jennings
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

Review 10.  Frustration in biomolecules.

Authors:  Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  Q Rev Biophys       Date:  2014-09-16       Impact factor: 5.318

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