Literature DB >> 9291956

Are rice chromosomes components of a holocentric chromosome ancestor?

G Moore1, L Aragón-Alcaide, M Roberts, S Reader, T Miller, T Foote.   

Abstract

Comparative genomics reveals that cereal genomes are composed of similar genomic building blocks (linkage blocks). By stacking these blocks in a unique order, it is possible to construct a single ancestral 'chromosome' which can be cleaved to give the basic structure of the 56 different chromosomes found in wheat, rice, maize, sorghum, millet and sugarcane. The borders of linkage blocks are defined by cereal centromeric and telomeric sites. However, a number of studies have shown that telomeric heterochromatin has neocentromeric activity, implying that linkage blocks are in fact defined by centromeric-like sites with conserved sequences. The structure of the ancestral cereal genome thus resembles a holocentric chromosome, which is the chromosome structure shared by the closest relatives of the Gramineae, the Cypericeae and Juncaceae.

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Mesh:

Year:  1997        PMID: 9291956

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  27 in total

1.  Differentiation between homoeologous chromosomes 1A of wheat and 1Am of Triticum monococcum and its recognition by the wheat Ph1 locus.

Authors:  J Dubcovsky; M Luo; J Dvorak
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-03       Impact factor: 11.205

2.  Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.).

Authors:  K Singh; T Ishii; A Parco; N Huang; D S Brar; G S Khush
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

Review 3.  Centromeric sites and cereal chromosome evolution.

Authors:  G Moore; M Roberts; L Aragon-Alcaide; T Foote
Journal:  Chromosoma       Date:  1997-04       Impact factor: 4.316

4.  Relationship between chromosome 9 of maize and wheat homeologous group 7 chromosomes.

Authors:  K M Devos; S Chao; Q Y Li; M C Simonetti; M D Gale
Journal:  Genetics       Date:  1994-12       Impact factor: 4.562

Review 5.  Genetic control of chromosome pairing in wheat.

Authors:  E R Sears
Journal:  Annu Rev Genet       Date:  1976       Impact factor: 16.830

6.  Recognition of homeology by the wheat Ph1 locus.

Authors:  M C Luo; J Dubcovsky; J Dvorák
Journal:  Genetics       Date:  1996-11       Impact factor: 4.562

7.  A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments.

Authors:  L M Chittenden; K F Schertz; Y R Lin; R A Wing; A H Paterson
Journal:  Theor Appl Genet       Date:  1994-03       Impact factor: 5.699

8.  Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat.

Authors:  A E Deynze; J C Nelson; M E Sorrells; S R McCouch; J Dubcovsky; J Dvorák; K S Gill; B S Gill; E S Lagudah; R Appels
Journal:  Genome       Date:  1995-02       Impact factor: 2.166

9.  Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region.

Authors:  A Kilian; D A Kudrna; A Kleinhofs; M Yano; N Kurata; B Steffenson; T Sasaki
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

10.  Comparative genome mapping of Sorghum and maize.

Authors:  R Whitkus; J Doebley; M Lee
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

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  13 in total

1.  Retrotransposon evolution in diverse plant genomes.

Authors:  T Langdon; C Seago; M Mende; M Leggett; H Thomas; J W Forster; R N Jones; G Jenkins
Journal:  Genetics       Date:  2000-09       Impact factor: 4.562

2.  Plant regeneration from callus of apomictic and sexual lines of Paspalum simplex and RFLP analysis of regenerated plants.

Authors:  L Molinari; A Busti; O Calderini; S Arcioni; F Pupilli
Journal:  Plant Cell Rep       Date:  2003-04-23       Impact factor: 4.570

3.  Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat.

Authors:  Michael Francki; Meredith Carter; Karon Ryan; Adam Hunter; Matthew Bellgard; Rudi Appels
Journal:  Funct Integr Genomics       Date:  2004-04-23       Impact factor: 3.410

4.  Centromeres were derived from telomeres during the evolution of the eukaryotic chromosome.

Authors:  Alfredo Villasante; José P Abad; María Méndez-Lago
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-08       Impact factor: 11.205

5.  Visualization of diffuse centromeres with centromere-specific histone H3 in the holocentric plant Luzula nivea.

Authors:  Kiyotaka Nagaki; Kazunari Kashihara; Minoru Murata
Journal:  Plant Cell       Date:  2005-06-03       Impact factor: 11.277

6.  Rice genome analysis to understand the rice plant as an assembly of genetic codes.

Authors:  T Sasaki
Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

7.  Complex meiotic configuration of the holocentric chromosomes: the intriguing case of the scorpion Tityus bahiensis.

Authors:  Marielle Cristina Schneider; Adilson Ariza Zacaro; Ricardo Pinto-da-Rocha; Denise Maria Candido; Doralice Maria Cella
Journal:  Chromosome Res       Date:  2009-09-04       Impact factor: 5.239

Review 8.  Rice genome organization: the centromere and genome interactions.

Authors:  Nori Kurata; Ken-Ichi Nonomura; Yoshiaki Harushima
Journal:  Ann Bot       Date:  2002-10       Impact factor: 4.357

9.  Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat.

Authors:  Mauricio La Rota; Mark E Sorrells
Journal:  Funct Integr Genomics       Date:  2004-01-22       Impact factor: 3.410

10.  Detailed comparison between the wheat chromosome group 7 short arms and the rice chromosome arms 6S and 8L with special reference to genes involved in starch biosynthesis.

Authors:  Zhongyi Li; Bingyan Huang; Lynette Rampling; Jun Wang; Jun Yu; Matthew Morell; Sadequr Rahman
Journal:  Funct Integr Genomics       Date:  2004-08-06       Impact factor: 3.410

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