Literature DB >> 9275189

The newt ribozyme is part of a riboprotein complex.

E Luzi1, F Eckstein, G Barsacchi.   

Abstract

Strand-specific transcripts of a satellite DNA of the newts, Notophthalmus and Triturus, are present in cells in monomeric and multimeric sizes. These transcripts undergo self-catalyzed, site-specific cleavage in vitro: the reaction requires Mg2+ and is mediated by a "hammerhead" domain. Transcription of the newt ribozyme appears to be performed by RNA polymerase II under the control of a proximal sequence element and a distal sequence element. In vitro, the newt ribozyme can cleave in trans an RNA substrate, suggesting that in vivo it might be involved in RNA processing events, perhaps as a riboprotein complex. Here we show that the newt ribozyme is in fact present as a riboprotein particle of about 12 S in the oocytes of Triturus. In addition, reconstitution experiments and gel-shift analyses show that a complex is assembled in vitro on the monomeric ribozyme molecules. UV cross-linking studies identify a few polypeptide species, ranging from 31 to 65 kDa, associated to the newt ribozyme with different affinities. Finally, we find that an appropriate oligoribonucleotide substrate is specifically cleaved by the riboproteic activity in S-100 ovary extracts.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9275189      PMCID: PMC23255          DOI: 10.1073/pnas.94.18.9711

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function.

Authors:  D A Wassarman; J A Steitz
Journal:  Mol Cell Biol       Date:  1991-07       Impact factor: 4.272

2.  Self-cleaving transcripts of satellite DNA from the newt.

Authors:  L M Epstein; J G Gall
Journal:  Cell       Date:  1987-02-13       Impact factor: 41.582

3.  Reconstitution of the U1 small nuclear ribonucleoprotein particle.

Authors:  J R Patton; R J Patterson; T Pederson
Journal:  Mol Cell Biol       Date:  1987-11       Impact factor: 4.272

4.  The 3' splice site of pre-messenger RNA is recognized by a small nuclear ribonucleoprotein.

Authors:  B Chabot; D L Black; D M LeMaster; J A Steitz
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

5.  Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs.

Authors:  M M Konarska; P A Sharp
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme.

Authors:  C Reich; G J Olsen; B Pace; N R Pace
Journal:  Science       Date:  1988-01-08       Impact factor: 47.728

8.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

9.  Eukaryotic gene transcription with purified components.

Authors:  J D Dignam; P L Martin; B S Shastry; R G Roeder
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

10.  Transcription of a satellite DNA in the newt.

Authors:  L M Epstein; K A Mahon; J G Gall
Journal:  J Cell Biol       Date:  1986-10       Impact factor: 10.539

View more
  12 in total

1.  A novel RNA-binding protein from Triturus carnifex identified by RNA-ligand screening with the newt hammerhead ribozyme.

Authors:  M A Denti; A E Martínez de Alba; R Sägesser; M Tsagris; M Tabler
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

2.  Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets.

Authors:  A A Rojas; A Vazquez-Tello; G Ferbeyre; F Venanzetti; L Bachmann; B Paquin; V Sbordoni; R Cedergren
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

Review 3.  The ubiquitous hammerhead ribozyme.

Authors:  Christian Hammann; Andrej Luptak; Jonathan Perreault; Marcos de la Peña
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

4.  Conformational heterogeneity and the determinants of tertiary stabilization in the hammerhead ribozyme from Dolichopoda cave crickets.

Authors:  Manami Roychowdhury-Saha; Sugata Roychowdhury; Donald H Burke
Journal:  RNA Biol       Date:  2011-06-29       Impact factor: 4.652

5.  Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers.

Authors:  Christina E Lünse; Zasha Weinberg; Ronald R Breaker
Journal:  RNA Biol       Date:  2017-11-03       Impact factor: 4.652

Review 6.  Transcription of highly repetitive tandemly organized DNA in amphibians and birds: A historical overview and modern concepts.

Authors:  Irina Trofimova; Alla Krasikova
Journal:  RNA Biol       Date:  2016-10-20       Impact factor: 4.652

7.  Intracellular ribozyme-catalyzed trans-cleavage of RNA monitored by fluorescence resonance energy transfer.

Authors:  D Vitiello; D B Pecchia; J M Burke
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

8.  Mammalian Pumilio 2 regulates dendrite morphogenesis and synaptic function.

Authors:  John P Vessey; Lucia Schoderboeck; Ewald Gingl; Ettore Luzi; Julia Riefler; Francesca Di Leva; Daniela Karra; Sabine Thomas; Michael A Kiebler; Paolo Macchi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-28       Impact factor: 11.205

9.  Schistosome satellite DNA encodes active hammerhead ribozymes.

Authors:  G Ferbeyre; J M Smith; R Cedergren
Journal:  Mol Cell Biol       Date:  1998-07       Impact factor: 4.272

10.  Phylogenetic footprinting of non-coding RNA: hammerhead ribozyme sequences in a satellite DNA family of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae).

Authors:  Lene Martinsen; Arild Johnsen; Federica Venanzetti; Lutz Bachmann
Journal:  BMC Evol Biol       Date:  2010-01-04       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.