Literature DB >> 9261080

An atomic model of the outer layer of the bluetongue virus core derived from X-ray crystallography and electron cryomicroscopy.

J M Grimes1, J Jakana, M Ghosh, A K Basak, P Roy, W Chiu, D I Stuart, B V Prasad.   

Abstract

BACKGROUND: Bluetongue virus (BTV), which belongs to the Reoviridae family and orbivirus genus, is a non-enveloped, icosahedral, double-stranded RNA virus. Several protein layers enclose its genome; upon cell entry the outer layer is stripped away leaving a core, the surface of which is composed of VP7. The structure of the trimeric VP7 molecule has previously been determined using X-ray crystallography. The articulated VP7 subunit consists of two domains, one which is largely alpha-helical and the other, smaller domain, is a beta barrel with jelly-roll topology. The relative orientations of these two domains vary in different crystal forms. The structure of VP7 and the organizations of 780 subunits of this molecule in the core of virus is central to the assembly and function of BTV.
RESULTS: A 23 A resolution map of the core, determined using electron cryomicroscopy (cryoEM) data, reveals that the 260 trimers of VP7 are organized on a rather precise T = 13 laevo icosahedral lattice, in accordance with the theory of quasi-equivalence. The VP7 layer occupies a shell that is between 260 A and 345 A from the centre of the core. Below this radius (230-260 A) lies the T = 1 layer of 120 molecules of VP3. By fitting the X-ray structure of an individual VP7 trimer onto the cryoEM BTV core structure, we have generated an atomic model of the VP7 layer of BTV. This demonstrates that one of the molecular structures seen in crystals of the isolated VP7 corresponds to the in vivo conformation of the molecule in the core.
CONCLUSIONS: The beta-barrel domains of VP7 are external to the core and interact with protein in the outer layer of the mature virion. The lower, alpha-helical domains of VP7 interact with VP3 molecules which form the inner layer of the BTV core. Adjacent VP7 trimer-trimer interactions in the T = 13 layer are mediated principally through well-defined regions in the broader lower domains, to form a structure that conforms well with that expected from the theory of quasi-equivalence with no significant conformational changes within the individual trimers. The VP3 layer determines the particle size and forms a rather smooth surface upon which the two-dimensional lattice of VP7 trimers is laid down.

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Year:  1997        PMID: 9261080     DOI: 10.1016/s0969-2126(97)00243-8

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  35 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion.

Authors:  M Mathieu; I Petitpas; J Navaza; J Lepault; E Kohli; P Pothier; B V Prasad; J Cohen; F A Rey
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

3.  Structural polymorphism of the major capsid protein of rotavirus.

Authors:  J Lepault; I Petitpas; I Erk; J Navaza; D Bigot; M Dona; P Vachette; J Cohen; F A Rey
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

4.  Solution x-ray scattering-based estimation of electron cryomicroscopy imaging parameters for reconstruction of virus particles.

Authors:  P A Thuman-Commike; H Tsuruta; B Greene; P E Prevelige; J King; W Chiu
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

5.  Reovirus polymerase lambda 3 localized by cryo-electron microscopy of virions at a resolution of 7.6 A.

Authors:  Xing Zhang; Stephen B Walker; Paul R Chipman; Max L Nibert; Timothy S Baker
Journal:  Nat Struct Biol       Date:  2003-11-09

6.  Intermolecular interactions in a two-layered viral capsid that requires a complex symmetry mismatch.

Authors:  Chang-Kwang Limn; Polly Roy
Journal:  J Virol       Date:  2003-10       Impact factor: 5.103

Review 7.  Virus crystallography.

Authors:  E E Fry; J Grimes; D I Stuart
Journal:  Mol Biotechnol       Date:  1999-08       Impact factor: 2.695

8.  C terminus of infectious bursal disease virus major capsid protein VP2 is involved in definition of the T number for capsid assembly.

Authors:  J R Castón; J L Martínez-Torrecuadrada; A Maraver; E Lombardo; J F Rodríguez; J I Casal; J L Carrascosa
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

9.  Assembly and intracellular localization of the bluetongue virus core protein VP3.

Authors:  Alak Kanti Kar; Nao Iwatani; Polly Roy
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

10.  Interactions between the inner and outer capsids of bluetongue virus.

Authors:  Emma L Nason; Rosalba Rothagel; Sharmila K Mukherjee; Alak Kanti Kar; Mario Forzan; B V Venkataram Prasad; Polly Roy
Journal:  J Virol       Date:  2004-08       Impact factor: 5.103

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