Literature DB >> 9260294

Use of a fusion protein to obtain crystals suitable for X-ray analysis: crystallization of a GST-fused protein containing the DNA-binding domain of DNA replication-related element-binding factor, DREF.

M Kuge1, Y Fujii, T Shimizu, F Hirose, A Matsukage, T Hakoshima.   

Abstract

Crystals of glutathione-S-transferase (GST)-fused protein containing the DNA-binding domain of DNA replication-related element-binding factor, DREF, were obtained under crystallization conditions similar to those for GST. Preliminary X-ray crystallographic analysis revealed that crystals of the GST-fused protein belong to space group P6(1)22 or P6(5)22 with unit cell dimensions a = b = 140.4 A, c = 93.5 A and gamma = 120 degrees, having one molecule in the crystallographic asymmetric unit. The crystals diffract to 2.5 A resolution. The cell dimensions are related to those of GST crystals thus far reported. Crystallization of the DNA-binding domain that was cleaved from the fused protein by thrombin was also carried out using several methods under numerous conditions, but efforts to produce well-ordered large crystals were unsuccessful. A possible application of GST-fusion proteins for small target proteins or domains to obtain crystals suitable for X-ray structure determination is proposed.

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Year:  1997        PMID: 9260294      PMCID: PMC2143758          DOI: 10.1002/pro.5560060822

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  17 in total

1.  Structure determination of the human protective protein: twofold averaging reveals the three-dimensional structure of a domain which was entirely absent in the initial model.

Authors:  G Rudenko; E Bonten; A d'Azzo; W G Hol
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-09-01

2.  Screening and optimization strategies for macromolecular crystal growth.

Authors:  R Cudney; S Patel; K Weisgraber; Y Newhouse; A McPherson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

Review 3.  Physical principles of protein crystallization.

Authors:  P C Weber
Journal:  Adv Protein Chem       Date:  1991

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Structure determination and refinement of human alpha class glutathione transferase A1-1, and a comparison with the Mu and Pi class enzymes.

Authors:  I Sinning; G J Kleywegt; S W Cowan; P Reinemer; H W Dirr; R Huber; G L Gilliland; R N Armstrong; X Ji; P G Board
Journal:  J Mol Biol       Date:  1993-07-05       Impact factor: 5.469

6.  The three-dimensional structure of a glutathione S-transferase from the mu gene class. Structural analysis of the binary complex of isoenzyme 3-3 and glutathione at 2.2-A resolution.

Authors:  X Ji; P Zhang; R N Armstrong; G L Gilliland
Journal:  Biochemistry       Date:  1992-10-27       Impact factor: 3.162

7.  Three-dimensional structure, catalytic properties, and evolution of a sigma class glutathione transferase from squid, a progenitor of the lens S-crystallins of cephalopods.

Authors:  X Ji; E C von Rosenvinge; W W Johnson; S I Tomarev; J Piatigorsky; R N Armstrong; G L Gilliland
Journal:  Biochemistry       Date:  1995-04-25       Impact factor: 3.162

8.  Structure and expression during development of Drosophila melanogaster gene for DNA polymerase alpha.

Authors:  F Hirose; M Yamaguchi; Y Nishida; M Masutani; H Miyazawa; F Hanaoka; A Matsukage
Journal:  Nucleic Acids Res       Date:  1991-09-25       Impact factor: 16.971

9.  Isolation and characterization of cDNA for DREF, a promoter-activating factor for Drosophila DNA replication-related genes.

Authors:  F Hirose; M Yamaguchi; K Kuroda; A Omori; T Hachiya; M Ikeda; Y Nishimoto; A Matsukage
Journal:  J Biol Chem       Date:  1996-02-16       Impact factor: 5.157

Review 10.  Transcriptional regulation of DNA replication-related genes in cell growth, differentiation and oncogenesis.

Authors:  A Matsukage; F Hirose; M Yamaguchi
Journal:  Jpn J Cancer Res       Date:  1994-01
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  16 in total

1.  Rapid purification and crystal structure analysis of a small protein carrying two terminal affinity tags.

Authors:  Uwe Mueller; Konrad Büssow; Anne Diehl; Franz J Bartl; Frank H Niesen; Lajos Nyarsik; Udo Heinemann
Journal:  J Struct Funct Genomics       Date:  2003

2.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

3.  Crystallization and preliminary X-ray analysis of the GST-fused human Bri3 N-terminal domain.

Authors:  Qilu Ye; Vinay Kumar Singh; James Daniel Blonde; Zongchao Jia
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2004-10-30

Review 4.  To fuse or not to fuse: what is your purpose?

Authors:  Mark R Bell; Mark J Engleka; Asim Malik; James E Strickler
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

5.  Thioredoxin as a fusion tag for carrier-driven crystallization.

Authors:  Lorenzo Corsini; Michael Hothorn; Klaus Scheffzek; Michael Sattler; Gunter Stier
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

6.  T4 lysozyme-facilitated crystallization of the human molybdenum cofactor-dependent enzyme mARC.

Authors:  Christian Kubitza; Carsten Ginsel; Florian Bittner; Antje Havemeyer; Bernd Clement; Axel J Scheidig
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-05-17       Impact factor: 1.056

7.  Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.

Authors:  Camila R Santos; Carla C Polo; Maria C M F Costa; Andrey F Z Nascimento; Andreia N Meza; Junio Cota; Zaira B Hoffmam; Rodrigo V Honorato; Paulo S L Oliveira; Gustavo H Goldman; Harry J Gilbert; Rolf A Prade; Roberto Ruller; Fabio M Squina; Dominic W S Wong; Mário T Murakami
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

8.  Evolution of Drosophila ribosomal protein gene core promoters.

Authors:  Xiaotu Ma; Kangyu Zhang; Xiaoman Li
Journal:  Gene       Date:  2008-11-07       Impact factor: 3.688

9.  Crystallization of a trimeric human T cell leukemia virus type 1 gp21 ectodomain fragment as a chimera with maltose-binding protein.

Authors:  R J Center; B Kobe; K A Wilson; T Teh; G J Howlett; B E Kemp; P Poumbourios
Journal:  Protein Sci       Date:  1998-07       Impact factor: 6.725

10.  Polymer-driven crystallization.

Authors:  Sehat Nauli; Saman Farr; Yueh-Jung Lee; Hye-Yeon Kim; Salem Faham; James U Bowie
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

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