Literature DB >> 9242900

From chemistry to biochemistry to catalysis to movement.

W P Jencks1.   

Abstract

Mechanisms of chemical reaction can often be predicted by determining the dependence of the lifetime of reaction intermediates on the structure of the reactants. When there is no lifetime in the presence of another reactant or catalyst the reaction proceeds through an enforced concerted mechanism. Noncovalent binding interactions between enzymes and their substrates provide a major contribution to catalysis by decreasing entropy and by destabilizing the ground state relative to the transition state, as well as by covalent and noncovalent chemical interactions with the substrate. Movement in biological systems, such as muscle contraction and the active transport of ions, is generally brought about through a series of alternating chemical and vectorial steps that involve a series of changes in the specificity for catalysis of the chemical and vectorial reactions. These changes divide the overall reaction into segments so that neither the chemical nor the vectorial reaction will be completed unless the other is also completed.

Mesh:

Year:  1997        PMID: 9242900     DOI: 10.1146/annurev.biochem.66.1.1

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  10 in total

Review 1.  Novel mechanisms in the regulation of phosphorus homeostasis.

Authors:  Theresa Berndt; Rajiv Kumar
Journal:  Physiology (Bethesda)       Date:  2009-02

2.  Kinetics of avibactam inhibition against Class A, C, and D β-lactamases.

Authors:  David E Ehmann; Haris Jahic; Philip L Ross; Rong-Fang Gu; Jun Hu; Thomas F Durand-Réville; Sushmita Lahiri; Jason Thresher; Stephania Livchak; Ning Gao; Tiffany Palmer; Grant K Walkup; Stewart L Fisher
Journal:  J Biol Chem       Date:  2013-08-02       Impact factor: 5.157

3.  Irrelevance of the power stroke for the directionality, stopping force, and optimal efficiency of chemically driven molecular machines.

Authors:  R Dean Astumian
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

4.  Scaffolding Catalysis: Expanding the Repertoire of Bifunctional Catalysts.

Authors:  Kian L Tan; Xixi Sun; Amanda D Worthy
Journal:  Synlett       Date:  2012-02-01       Impact factor: 2.454

Review 5.  On the beneficent thickness of water.

Authors:  E Branscomb; M J Russell
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

Review 6.  Formaldehyde crosslinking: a tool for the study of chromatin complexes.

Authors:  Elizabeth A Hoffman; Brian L Frey; Lloyd M Smith; David T Auble
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

7.  Quantum-dynamical picture of a multistep enzymatic process: reaction catalyzed by phospholipase A(2).

Authors:  P Bała; P Grochowski; K Nowiński; B Lesyng; J A McCammon
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

Review 8.  The Physics and Physical Chemistry of Molecular Machines.

Authors:  R Dean Astumian; Shayantani Mukherjee; Arieh Warshel
Journal:  Chemphyschem       Date:  2016-06-15       Impact factor: 3.102

Review 9.  Advances in optimizing enzyme electrostatic preorganization.

Authors:  Matthew R Hennefarth; Anastassia N Alexandrova
Journal:  Curr Opin Struct Biol       Date:  2021-07-17       Impact factor: 6.809

10.  Carbohydrate-active enzymes exemplify entropic principles in metabolism.

Authors:  Onder Kartal; Sebastian Mahlow; Alexander Skupin; Oliver Ebenhöh
Journal:  Mol Syst Biol       Date:  2011-10-25       Impact factor: 11.429

  10 in total

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