Literature DB >> 9228948

A magnesium ion core at the heart of a ribozyme domain.

J H Cate1, R L Hanna, J A Doudna.   

Abstract

Large ribozymes require divalent metal ions to fold. We show here that the tertiary structure of the Tetrahymena group I intron P4-P6 domain nucleates around a magnesium ion core. In the domain crystal structure, five magnesium ions bind in a three-helix junction at the centre of the molecule. Single atom changes in any one of four magnesium sites in this three-helix junction destroy folding of the entire 160-nucleotide P4-P6 domain. The magnesium ion core may be the RNA counterpart to the protein hydrophobic core, burying parts of the RNA molecule in the native structure.

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Year:  1997        PMID: 9228948     DOI: 10.1038/nsb0797-553

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  102 in total

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2.  Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme.

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Journal:  RNA       Date:  2000-04       Impact factor: 4.942

3.  Selecting rRNA binding sites for the ribosomal proteins L4 and L6 from randomly fragmented rRNA: application of a method called SERF.

Authors:  U Stelzl; C M Spahn; K H Nierhaus
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4.  An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme.

Authors:  M S Rook; D K Treiber; J R Williamson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

5.  Folding of the group I intron ribozyme from the 26S rRNA gene of Candida albicans.

Authors:  Y Zhang; M J Leibowitz
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

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7.  A short fragment of 23S rRNA containing the binding sites for two ribosomal proteins, L24 and L4, is a key element for rRNA folding during early assembly.

Authors:  U Stelzl; K H Nierhaus
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8.  Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.

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9.  Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics.

Authors:  J Pan; D Thirumalai; S A Woodson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

10.  Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines.

Authors:  J A Berglund; M Rosbash; S C Schultz
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

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