Literature DB >> 9228616

On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies.

L Zhang1.   

Abstract

A conjecture of Mirkin, Muchnik, and Smith is answered affirmatively which connects the inconsistency function, a biologically meaningful similarity/dissimilarity measure for a gene tree and a species tree, to the mutation cost function, a combinatorial measure based on the mapping of trees. A linear-time algorithm for computing the mutation cost function is also derived from the conjecture.

Mesh:

Year:  1997        PMID: 9228616     DOI: 10.1089/cmb.1997.4.177

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  21 in total

1.  Going nuclear: gene family evolution and vertebrate phylogeny reconciled.

Authors:  James A Cotton; Roderic D M Page
Journal:  Proc Biol Sci       Date:  2002-08-07       Impact factor: 5.349

2.  Inferring gene duplications, transfers and losses can be done in a discrete framework.

Authors:  Vincent Ranwez; Celine Scornavacca; Jean-Philippe Doyon; Vincent Berry
Journal:  J Math Biol       Date:  2015-09-04       Impact factor: 2.259

3.  Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.

Authors:  Ann-Charlotte Berglund-Sonnhammer; Pär Steffansson; Matthew J Betts; David A Liberles
Journal:  J Mol Evol       Date:  2006-07-07       Impact factor: 2.395

4.  Evolutionary constraints on structural similarity in orthologs and paralogs.

Authors:  Mark E Peterson; Feng Chen; Jeffery G Saven; David S Roos; Patricia C Babbitt; Andrej Sali
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

5.  DrML: probabilistic modeling of gene duplications.

Authors:  Paweł Górecki; Oliver Eulenstein
Journal:  J Comput Biol       Date:  2013-09-27       Impact factor: 1.479

6.  Reconciliation with non-binary species trees.

Authors:  Benjamin Vernot; Maureen Stolzer; Aiton Goldman; Dannie Durand
Journal:  J Comput Biol       Date:  2008-10       Impact factor: 1.479

7.  Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Authors:  Pawel Górecki; Gordon J Burleigh; Oliver Eulenstein
Journal:  BMC Bioinformatics       Date:  2011-02-15       Impact factor: 3.169

8.  Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.

Authors:  Ruchi Chaudhary; J Gordon Burleigh; Oliver Eulenstein
Journal:  BMC Bioinformatics       Date:  2012-06-25       Impact factor: 3.169

9.  Efficient algorithms for reconciling gene trees and species networks via duplication and loss events.

Authors:  Thu-Hien To; Celine Scornavacca
Journal:  BMC Genomics       Date:  2015-10-02       Impact factor: 3.969

10.  The multiple gene duplication problem revisited.

Authors:  Mukul S Bansal; Oliver Eulenstein
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

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