Literature DB >> 9223311

Retention of replication fidelity by a DNA polymerase functioning in a distantly related environment.

H K Dressman1, C C Wang, J D Karam, J W Drake.   

Abstract

The primary structures of the replicative DNA polymerases (gp43s) of bacteriophage T4 and its distant phylogenetic relative RB69 are diverged, retaining only 61% identity and 74% similarity. Nevertheless, RB69 gp43 substitutes effectively for T4 gp43 in T4 DNA replication in vivo. We show here that RB69 gp43 replicates T4 genomes in vivo with a fidelity similar to that achieved by T4 gp43. Furthermore, replication by RB69 gp43 in the distantly related environment does not enhance the mutator activities of mutations in T4 genes that encode other components of the multienzyme DNA replicase. We also show that the fidelities of RB69 gp43 and T4 gp43 are both high in vitro and that they are similarly and sharply reduced in vivo by mutations that eliminate the 3'-exonucleolytic proofreading function. We conclude that gp43 interactions with the other replication proteins are probably nonessential for polymerase fidelity.

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Year:  1997        PMID: 9223311      PMCID: PMC21553          DOI: 10.1073/pnas.94.15.8042

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Kinetic characterization of the polymerase and exonuclease activities of the gene 43 protein of bacteriophage T4.

Authors:  T L Capson; J A Peliska; B F Kaboord; M W Frey; C Lively; M Dahlberg; S J Benkovic
Journal:  Biochemistry       Date:  1992-11-17       Impact factor: 3.162

2.  Mutagenesis by transient misalignment.

Authors:  T A Kunkel; A Soni
Journal:  J Biol Chem       Date:  1988-10-15       Impact factor: 5.157

Review 3.  Smart machines at the DNA replication fork.

Authors:  B Stillman
Journal:  Cell       Date:  1994-09-09       Impact factor: 41.582

4.  Isolation, characterization, and kinetic properties of truncated forms of T4 DNA polymerase that exhibit 3'-5' exonuclease activity.

Authors:  T C Lin; G Karam; W H Konigsberg
Journal:  J Biol Chem       Date:  1994-07-29       Impact factor: 5.157

5.  Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit.

Authors:  T A Kunkel; S S Patel; K A Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

6.  Control of mutation frequency by bacteriophage T4 DNA polymerase. II. Accuracy of nucleotide selection by the L88 mutator, CB120 antimutator, and wild type phage T4 DNA polymerases.

Authors:  F D Gillin; N G Nossal
Journal:  J Biol Chem       Date:  1976-09-10       Impact factor: 5.157

7.  Reversion of frameshift mutations stimulated by lesions in early function genes of bacteriophage T4.

Authors:  H Bernstein
Journal:  J Virol       Date:  1971-04       Impact factor: 5.103

8.  HeLa cell single-stranded DNA-binding protein increases the accuracy of DNA synthesis by DNA polymerase alpha in vitro.

Authors:  M P Carty; A S Levine; K Dixon
Journal:  Mutat Res       Date:  1992-06       Impact factor: 2.433

9.  Primary structure of T4 DNA polymerase. Evolutionary relatedness to eucaryotic and other procaryotic DNA polymerases.

Authors:  E K Spicer; J Rush; C Fung; L J Reha-Krantz; J D Karam; W H Konigsberg
Journal:  J Biol Chem       Date:  1988-06-05       Impact factor: 5.157

10.  General antimutators are improbable.

Authors:  J W Drake
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

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  13 in total

1.  Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy.

Authors:  Anna Bebenek; Geraldine T Carver; Farid A Kadyrov; Grace E Kissling; John W Drake
Journal:  Genetics       Date:  2005-02-03       Impact factor: 4.562

2.  Templated mutagenesis in bacteriophage T4 involving imperfect direct or indirect sequence repeats.

Authors:  Gary E Schultz; John W Drake
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

3.  Divergence of a DNA replication gene cluster in the T4-related bacteriophage RB69.

Authors:  L S Yeh; T Hsu; J D Karam
Journal:  J Bacteriol       Date:  1998-04       Impact factor: 3.490

4.  A species barrier between bacteriophages T2 and T4: exclusion, join-copy and join-cut-copy recombination and mutagenesis in the dCTPase genes.

Authors:  T P Gary; N E Colowick; G Mosig
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

5.  Aspects of the ultraviolet photobiology of some T-even bacteriophages.

Authors:  L A Smith; J W Drake
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

Review 6.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

7.  Variation in mutation rates caused by RB69pol fidelity mutants can be rationalized on the basis of their kinetic behavior and crystal structures.

Authors:  Shuangluo Xia; Mina Wang; Harold R Lee; Arjun Sinha; Gregor Blaha; Thomas Christian; Jimin Wang; William Konigsberg
Journal:  J Mol Biol       Date:  2011-01-07       Impact factor: 5.469

8.  The roles of Tyr391 and Tyr619 in RB69 DNA polymerase replication fidelity.

Authors:  Agata Jacewicz; Karolina Makiela; Andrzej Kierzek; John W Drake; Anna Bebenek
Journal:  J Mol Biol       Date:  2007-02-03       Impact factor: 5.469

9.  The L561A substitution in the nascent base-pair binding pocket of RB69 DNA polymerase reduces base discrimination.

Authors:  Hong Zhang; Chanu Rhee; Anna Bebenek; John W Drake; Jimin Wang; William Konigsberg
Journal:  Biochemistry       Date:  2006-02-21       Impact factor: 3.162

10.  Proficient Replication of the Yeast Genome by a Viral DNA Polymerase.

Authors:  Joseph L Stodola; Carrie M Stith; Peter M Burgers
Journal:  J Biol Chem       Date:  2016-04-12       Impact factor: 5.157

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