Literature DB >> 9223255

DNA variation at the Sod locus of Drosophila melanogaster: an unfolding story of natural selection.

R R Hudson1, A G Sáez, F J Ayala.   

Abstract

Patterns of variation at the Sod locus of Drosophila melanogaster suggest that the protein polymorphism at this locus has very recently arisen. In addition, it appears that a previously rare DNA variant has been recently and rapidly driven to intermediate frequency. From the size of the region (>20 kb) that has been swept along with this rare variant, and patterns of linkage disequilibrium in the region, it is inferred that strength of selection was large (s > 0.01) and that the sweep occurred more than 25,000 generations ago. In addition, there are striking similarities to patterns of variation observed at the Est6 and Est-P loci, which are located approximately 1,000 kb from Sod.

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Year:  1997        PMID： 9223255      PMCID： PMC33684          DOI： 10.1073/pnas.94.15.7725

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  20 in total

1.  Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence.

Authors:  M Kreitman; R R Hudson
Journal:  Genetics       Date:  1991-03       Impact factor: 4.562

2.  Inversions fail to account for allozyme clines.

Authors:  R A Voelker; C C Cockerham; F M Johnson; H E Schaffer; T Mukai; L E Mettler
Journal:  Genetics       Date:  1978-03       Impact factor: 4.562

3.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

Review 4.  Organization of the Rosy locus in Drosophila melanogaster.

Authors:  A Chovnick; W Gelbart; M McCarron
Journal:  Cell       Date:  1977-05       Impact factor: 41.582

5.  Rates of DNA change and phylogeny from the DNA sequences of the alcohol dehydrogenase gene for five closely related species of Hawaiian Drosophila.

Authors:  R G Rowan; J A Hunt
Journal:  Mol Biol Evol       Date:  1991-01       Impact factor: 16.240

6.  Amino acid polymorphisms for esterase-6 in Drosophila melanogaster.

Authors:  P H Cooke; J G Oakeshott
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

7.  The coalescent process in models with selection and recombination.

Authors:  R R Hudson; N L Kaplan
Journal:  Genetics       Date:  1988-11       Impact factor: 4.562

8.  Nucleotide polymorphism in the 5' promoter region of esterase 6 in Drosophila melanogaster and its relationship to enzyme activity variation.

Authors:  W A Odgers; M J Healy; J G Oakeshott
Journal:  Genetics       Date:  1995-09       Impact factor: 4.562

9.  Superoxide dismutase in Drosophila melanogaster: biochemical and structural characterization of allozyme variants.

Authors:  Y M Lee; H P Misra; F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

10.  Superoxide dismutase in Drosophila melanogaster. Mutation site difference between two electromorphs.

Authors:  Y M Lee; F J Ayala
Journal:  FEBS Lett       Date:  1985-01-01       Impact factor: 4.124
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  30 in total

1.  Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster.

Authors:  P Andolfatto; J D Wall; M Kreitman
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

2.  Molecular evolution of two linked genes, Est-6 and Sod, in Drosophila melanogaster.

Authors:  E S Balakirev; E I Balakirev; F Rodríguez-Trelles; F J Ayala
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

3.  DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure.

Authors:  J Rozas; M Gullaud; G Blandin; M Aguadé
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

4.  Effects of inbreeding on the genetic diversity of populations.

Authors:  Deborah Charlesworth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-06-29       Impact factor: 6.237

5.  Molecular population genetics of the beta-esterase gene cluster of Drosophila melanogaster.

Authors:  Evgeniy S Balakirev; Francisco J Ayala
Journal:  J Genet       Date:  2003-12       Impact factor: 1.166

6.  Experimental evolution reveals natural selection on standing genetic variation.

Authors:  Henrique Teotónio; Ivo M Chelo; Martina Bradić; Michael R Rose; Anthony D Long
Journal:  Nat Genet       Date:  2009-01-11       Impact factor: 38.330

7.  Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans.

Authors:  J Parsch; C D Meiklejohn; D L Hartl
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

8.  Molecular population genetics and evolution of a prion-like protein in Saccharomyces cerevisiae.

Authors:  M A Jensen; H L True; Y O Chernoff; S Lindquist
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

9.  Meager genetic variability of the human malaria agent Plasmodium vivax.

Authors:  M C Leclerc; P Durand; C Gauthier; S Patot; N Billotte; M Menegon; C Severini; F J Ayala; F Renaud
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-24       Impact factor: 11.205

10.  Patterns of DNA sequence polymorphism at Sod vicinities in Drosophila melanogaster: unraveling the footprint of a recent selective sweep.

Authors:  Alberto G Sáez; Andrey Tatarenkov; Eladio Barrio; Nelsson H Becerra; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-10       Impact factor: 11.205
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