Literature DB >> 9216152

Neural network analysis of flow cytometry immunophenotype data.

R Kothari1, H Cualing, T Balachander.   

Abstract

Acute leukemia is one of the leading malignancies in the United States with a mortality rate strongly influenced by the phenotype. This phenotype is based on detection of cell associated antigens normally expressed during leucopoietic differentiation. In this regard, leukemia classified as lymphoid or myeloid by phenotype is also classified as a candidate for the corresponding chemotherapy protocol. Additionally, the subtype of leukemia based on the degree of differentiation and cell maturity influence prognosis, response to treatment, and median survival times. In this paper, we analyze immunophenotype flow cytometry data toward categorization of leukemia into subcategories based on lineage and differentiation antigen expression. Twenty-eight inputs (derived from the mean fluorescence intensity of up to 27 antibodies, and an additional binary input denoting the past diagnosis of leukemia) are used as input to a neural classifier to categorize a total of 170 cases into the lineage and differentiation categories of leukemia. The neural classifier consisted of a feed forward network trained using back propagation. A complexity regulation term (weight decay) was used to improve the generalization performance of the neural classifier. A training error of 0.0% and a generalization error of 10.3% was obtained for categorization based on lineage, while a training error of 0.0% and a generalization error of 10.0% was obtained for categorization based on differentiation. These results indicate that objective classification of multifaceted phenotypes in leukemia can be achieved for analyzing multiparameter data in flow cytometry and further categorization into the prognostic subtypes.

Entities:  

Mesh:

Year:  1996        PMID: 9216152     DOI: 10.1109/10.508551

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  5 in total

1.  Using a neural network with flow cytometry histograms to recognize cell surface protein binding patterns.

Authors:  Eun-Young Kim; Qing Zeng; James Rawn; Matthew Wand; Alan J Young; Edgar Milford; Steven J Mentzer; Robert A Greenes
Journal:  Proc AMIA Symp       Date:  2002

Review 2.  Application of machine learning in the management of acute myeloid leukemia: current practice and future prospects.

Authors:  Jan-Niklas Eckardt; Martin Bornhäuser; Karsten Wendt; Jan Moritz Middeke
Journal:  Blood Adv       Date:  2020-12-08

3.  High-throughput secondary screening at the single-cell level.

Authors:  J Paul Robinson; Valery Patsekin; Cheryl Holdman; Kathy Ragheb; Jennifer Sturgis; Ray Fatig; Larisa V Avramova; Bartek Rajwa; V Jo Davisson; Nicole Lewis; Padma Narayanan; Nianyu Li; C W Qualls
Journal:  J Lab Autom       Date:  2012-09-10

4.  Misty Mountain clustering: application to fast unsupervised flow cytometry gating.

Authors:  István P Sugár; Stuart C Sealfon
Journal:  BMC Bioinformatics       Date:  2010-10-09       Impact factor: 3.169

5.  A survey of flow cytometry data analysis methods.

Authors:  Ali Bashashati; Ryan R Brinkman
Journal:  Adv Bioinformatics       Date:  2009-12-06
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.