Literature DB >> 9204286

Circular permutations of natural protein sequences: structural evidence.

Y Lindqvist1, G Schneider.   

Abstract

Over the past few years, evidence has accumulated that shows that circularly permuted proteins resulting from permutations in their coding genes can indeed occur naturally. In most instances, these circularly permuted amino acid sequences have been detected by sequence alignment of homologous proteins. Circular permutations may escape detection, however, when based on sequence comparisons alone, as recently illustrated by transaldolase, a member of the class I aldolase family.

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Year:  1997        PMID: 9204286     DOI: 10.1016/s0959-440x(97)80061-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  58 in total

1.  Descent of a split RNA.

Authors:  Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

2.  Circularly permuted proteins in the protein structure database.

Authors:  J Jung; B Lee
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

3.  Proteins of circularly permuted sequence present within the same organism: the major serine proteinase inhibitor from Capsicum annuum seeds.

Authors:  N Antcheva; A Pintar; A Patthy; A Simoncsits; E Barta; B Tchorbanov; S Pongor
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

4.  Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures.

Authors:  András Szilágyi; Yang Zhang; Péter Závodszky
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

5.  Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold.

Authors:  Charmaine Hoang; Adrian R Ferre-D'Amare
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

6.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

Authors:  Thomas U Schwartz; Rudolf Walczak; Günter Blobel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

7.  Evolutionary resealing of a split RNA: Reversal of gene permutation.

Authors:  Kelly Williams
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

Review 8.  Proteins: form and function.

Authors:  Roy D Sleator
Journal:  Bioeng Bugs       Date:  2012-03-01

9.  Artificial domain duplication replicates evolutionary history of ketol-acid reductoisomerases.

Authors:  Jackson K B Cahn; Sabine Brinkmann-Chen; Andrew R Buller; Frances H Arnold
Journal:  Protein Sci       Date:  2015-12-21       Impact factor: 6.725

10.  LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains.

Authors:  Shide Liang; Chi Zhang; Yaoqi Zhou
Journal:  J Comput Chem       Date:  2013-12-10       Impact factor: 3.376

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