Literature DB >> 9204280

Progress in protein structure prediction.

D T Jones1.   

Abstract

If protein structure prediction methods are to make any impact on the impending onerous task of analyzing the large numbers of unknown protein sequences generated by the ongoing genome-sequencing projects, it is vital that they make the difficult transition from computational 'gedankenexperiments' to practical software tools. This has already happened in the field of comparative modelling and is currently happening in the threading field. Unfortunately, there is little evidence of this transition happening in the field of ab initio tertiary-structure prediction.

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Year:  1997        PMID: 9204280     DOI: 10.1016/s0959-440x(97)80055-3

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  24 in total

1.  MODBASE, a database of annotated comparative protein structure models.

Authors:  R Sánchez; U Pieper; N Mirković; P I de Bakker; E Wittenstein; A Sali
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Recent improvements in prediction of protein structure by global optimization of a potential energy function.

Authors:  J Pillardy; C Czaplewski; A Liwo; J Lee; D R Ripoll; R Kaźmierkiewicz; S Oldziej; W J Wedemeyer; K D Gibson; Y A Arnautova; J Saunders; Y J Ye; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

Review 3.  Classification of protein folds.

Authors:  Robert B Russell
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

4.  Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain.

Authors:  Brian M Swalla; Richard I Gumport; Jeffrey F Gardner
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

Review 5.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

6.  Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

Authors:  J Lee; A Liwo; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

7.  Protein structure prediction by global optimization of a potential energy function.

Authors:  A Liwo; J Lee; D R Ripoll; J Pillardy; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

8.  Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.

Authors:  Hongyi Zhou; Yaoqi Zhou
Journal:  Proteins       Date:  2005-02-01

9.  Detecting remotely related proteins by their interactions and sequence similarity.

Authors:  Jordi Espadaler; Ramón Aragüés; Narayanan Eswar; Marc A Marti-Renom; Enrique Querol; Francesc X Avilés; Andrej Sali; Baldomero Oliva
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

10.  ModLink+: improving fold recognition by using protein-protein interactions.

Authors:  Oriol Fornes; Ramon Aragues; Jordi Espadaler; Marc A Marti-Renom; Andrej Sali; Baldo Oliva
Journal:  Bioinformatics       Date:  2009-04-08       Impact factor: 6.937

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