Literature DB >> 9192620

Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution.

S Raghunathan1, C S Ricard, T M Lohman, G Waksman.   

Abstract

The crystal structure of the tetrameric DNA-binding domain of the single-stranded DNA binding protein from Escherichia coli was determined at a resolution of 2.9 A using multiwavelength anomalous dispersion. Each monomer in the tetramer is topologically similar to an oligomer-binding fold. Two monomers each contribute three beta-strands to a single six-stranded beta-sheet to form a dimer. Two dimer-dimer interfaces are observed within the crystal. One of these stabilizes the tetramer in solution. The other interface promotes a superhelical structure within the crystal that may reflect tetramer-tetramer interactions involved in the positive cooperative binding of the single-stranded DNA-binding protein to single-stranded DNA.

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Year:  1997        PMID: 9192620      PMCID: PMC21213          DOI: 10.1073/pnas.94.13.6652

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

2.  Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA.

Authors:  A Bochkarev; R A Pfuetzner; A M Edwards; L Frappier
Journal:  Nature       Date:  1997-01-09       Impact factor: 49.962

3.  T4 bacteriophage gene 32: a structural protein in the replication and recombination of DNA.

Authors:  B M Alberts; L Frey
Journal:  Nature       Date:  1970-09-26       Impact factor: 49.962

4.  Escherichia coli single-strand binding protein forms multiple, distinct complexes with single-stranded DNA.

Authors:  W Bujalowski; T M Lohman
Journal:  Biochemistry       Date:  1986-12-02       Impact factor: 3.162

5.  Physiochemical properties of DNA binding proteins: gene 32 protein of T4 and Escherichia coli unwinding protein.

Authors:  R A Anderson; J E Coleman
Journal:  Biochemistry       Date:  1975-12-16       Impact factor: 3.162

6.  Negative co-operativity in Escherichia coli single strand binding protein-oligonucleotide interactions. II. Salt, temperature and oligonucleotide length effects.

Authors:  W Bujalowski; T M Lohman
Journal:  J Mol Biol       Date:  1989-05-05       Impact factor: 5.469

7.  Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties.

Authors:  U Curth; C Urbanke; J Greipel; H Gerberding; V Tiranti; M Zeviani
Journal:  Eur J Biochem       Date:  1994-04-01

8.  Salt-dependent changes in the DNA binding co-operativity of Escherichia coli single strand binding protein.

Authors:  T M Lohman; L B Overman; S Datta
Journal:  J Mol Biol       Date:  1986-02-20       Impact factor: 5.469

9.  A DNA-unwinding protein isolated from Escherichia coli: its interaction with DNA and with DNA polymerases.

Authors:  N Sigal; H Delius; T Kornberg; M L Gefter; B Alberts
Journal:  Proc Natl Acad Sci U S A       Date:  1972-12       Impact factor: 11.205

10.  Using known substructures in protein model building and crystallography.

Authors:  T A Jones; S Thirup
Journal:  EMBO J       Date:  1986-04       Impact factor: 11.598

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  107 in total

1.  Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications.

Authors:  J Y Lee; C Chang; H K Song; J Moon; J K Yang; H K Kim; S T Kwon; S W Suh
Journal:  EMBO J       Date:  2000-03-01       Impact factor: 11.598

2.  Differential functional behavior of viral phi29, Nf and GA-1 SSB proteins.

Authors:  I Gascón; J M Lázaro; M Salas
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

3.  Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels.

Authors:  N Nagano; E G Hutchinson; J M Thornton
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

Review 4.  Structural and mechanistic conservation in DNA ligases.

Authors:  A J Doherty; S W Suh
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

5.  Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7.

Authors:  T Hollis; J M Stattel; D S Walther; C C Richardson; T Ellenberger
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

Review 6.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

7.  E. coli SSB tetramer binds the first and second molecules of (dT)(35) with heat capacities of opposite sign.

Authors:  Alexander G Kozlov; Timothy M Lohman
Journal:  Biophys Chem       Date:  2011-05-12       Impact factor: 2.352

Review 8.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

9.  Characterization of binding-induced changes in dynamics suggests a model for sequence-nonspecific binding of ssDNA by replication protein A.

Authors:  Shibani Bhattacharya; Maria-Victoria Botuyan; Fred Hsu; Xi Shan; A I Arunkumar; Cheryl H Arrowsmith; Aled M Edwards; Walter J Chazin
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

10.  Sequence-structure mapping errors in the PDB: OB-fold domains.

Authors:  Ceslovas Venclovas; Krzysztof Ginalski; Chulhee Kang
Journal:  Protein Sci       Date:  2004-05-07       Impact factor: 6.725

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