Literature DB >> 9175860

Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis.

S Longhi1, M Czjzek, V Lamzin, A Nicolas, C Cambillau.   

Abstract

X-ray data have been recorded to 1.0 A resolution from a crystal of Fusarium solani cutinase using synchrotron radiation and an imaging-plate scanner. The anisotropic treatment of thermal motion led to a fivefold increase in accuracy and to a considerable quality improvement in the electron density maps with respect to an intermediate isotropic model. The final model has an R-factor of 9.4%, with a mean coordinate error of 0.021 A, as estimated from inversion of the least-squares matrix. The availability of an accurate structure at atomic resolution and of meaningful estimates of the errors in its atomic parameters, allowed an extensive analysis of several stereochemical parameters, such as peptide planarity, main-chain and some side-chain bond distances. The hydrogen atoms could be clearly identified in the electron density, thus providing unambiguous evidence on the protonation state of the catalytic histidine residue. The atomic resolution revealed an appreciable extent of flexibility in the cutinase active site, which might be correlated with a possible adaptation to different substrates. The anisotropic treatment of thermal factors provided insights into the anisotropic nature of motions. The analysis of these motions in the two loops delimiting the catalytic crevice pointed out a "breath-like" movement in the substrate binding region of cutinase.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9175860     DOI: 10.1006/jmbi.1997.1000

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  24 in total

1.  Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.

Authors:  Donald S Berkholz; Camden M Driggers; Maxim V Shapovalov; Roland L Dunbrack; P Andrew Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-23       Impact factor: 11.205

Review 2.  Proteins: form and function.

Authors:  Roy D Sleator
Journal:  Bioeng Bugs       Date:  2012-03-01

3.  Protein structural variation in computational models and crystallographic data.

Authors:  Dmitry A Kondrashov; Adam W Van Wynsberghe; Ryan M Bannen; Qiang Cui; George N Phillips
Journal:  Structure       Date:  2007-02       Impact factor: 5.006

4.  Crystallization and preliminary X-ray analysis of recombinant Glomerella cingulata cutinase.

Authors:  Mun Peak Nyon; David W Rice; John M Berrisford; Huazhang Huang; Arthur J G Moir; C Jeremy Craven; Sheila Nathan; Nor Muhammad Mahadi; Farah Diba Abu Bakar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-23

5.  Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Paul A Sigala; Daniel A Kraut; Jose M M Caaveiro; Brandon Pybus; Eliza A Ruben; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2008-09-23       Impact factor: 15.419

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Conformational flexibility and strand arrangements of the membrane-associated HIV fusion peptide trimer probed by solid-state NMR spectroscopy.

Authors:  Zhaoxiong Zheng; Rong Yang; Michele L Bodner; David P Weliky
Journal:  Biochemistry       Date:  2006-10-31       Impact factor: 3.162

8.  Water dependent properties of cutinase in nonaqueous solvents: a computational study of enantioselectivity.

Authors:  Nuno M Micaelo; Vitor H Teixeira; António M Baptista; Cláudio M Soares
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

9.  Consequences of breaking the Asp-His hydrogen bond of the catalytic triad: effects on the structure and dynamics of the serine esterase cutinase.

Authors:  E Y Lau; T C Bruice
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

10.  Hydrogen atoms in proteins: positions and dynamics.

Authors:  Niklas Engler; Andreas Ostermann; Nobuo Niimura; Fritz G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-22       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.