Literature DB >> 9146963

Computer program for the equations describing the steady state of enzyme reactions.

R Varon1, F Garcia-Sevilla, M Garcia-Moreno, F Garcia-Canovas, R Peyro, R G Duggleby.   

Abstract

MOTIVATION: The derivation of steady-state equations is frequently carried out in enzyme kinetic studies. Done manually, this becomes tedious and prone to human error. The computer programs now available which are able to accept reaction mechanisms of some complexity are focused only on the strict steady-state approach.
RESULTS: Here we present a computer program called REFERASS, with a short computation time and a user-friendly format for the input and output files, able to derive the strict steady-state equations and/or those corresponding to the usual assumption that one ore more of the reversible steps are in rapid equilibrium. This program handles enzyme-catalysed reactions with mechanisms involving up to 255 enzyme species connected by up to 255 reaction steps, subject to limits imposed by the memory and disk space available.

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Year:  1997        PMID: 9146963     DOI: 10.1093/bioinformatics/13.2.159

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  6 in total

1.  Regulation of yeast acetohydroxyacid synthase by valine and ATP.

Authors:  S S Pang; R G Duggleby
Journal:  Biochem J       Date:  2001-08-01       Impact factor: 3.857

2.  Efficient manipulation and generation of Kirchhoff polynomials for the analysis of non-equilibrium biochemical reaction networks.

Authors:  Pencho Yordanov; Jörg Stelling
Journal:  J R Soc Interface       Date:  2020-04-22       Impact factor: 4.118

3.  Expression, purification and characterization of Arabidopsis thaliana acetohydroxyacid synthase.

Authors:  A K Chang; R G Duggleby
Journal:  Biochem J       Date:  1997-10-01       Impact factor: 3.857

4.  The Relationship between the IC50 Values and the Apparent Inhibition Constant in the Study of Inhibitors of Tyrosinase Diphenolase Activity Helps Confirm the Mechanism of Inhibition.

Authors:  Pablo Garcia-Molina; Francisco Garcia-Molina; Jose Antonio Teruel-Puche; Jose Neptuno Rodriguez-Lopez; Francisco Garcia-Canovas; Jose Luis Muñoz-Muñoz
Journal:  Molecules       Date:  2022-05-13       Impact factor: 4.927

5.  Generating rate equations for complex enzyme systems by a computer-assisted systematic method.

Authors:  Feng Qi; Ranjan K Dash; Yu Han; Daniel A Beard
Journal:  BMC Bioinformatics       Date:  2009-08-04       Impact factor: 3.169

6.  Complete steady-state rate equation for DNA ligase and its use for measuring product kinetic parameters of NAD⁺-dependent DNA ligase from Haemophilus influenzae.

Authors:  Adam B Shapiro
Journal:  BMC Res Notes       Date:  2014-05-09
  6 in total

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