Literature DB >> 9144772

Identification of a novel bond between a histidine and the essential tyrosine in catalase HPII of Escherichia coli.

J Bravo1, I Fita, J C Ferrer, W Ens, A Hillar, J Switala, P C Loewen.   

Abstract

A bond between the N delta of the imidazole ring of His 392 and the C beta of the essential Tyr 415 has been found in the refined crystal structure at 1.9 A resolution of catalase HPII of Escherichia coli. This novel type of covalent linkage is clearly defined in the electron density map of HPII and is confirmed by matrix-assisted laser desorption/ionization mass spectrometry analysis of tryptic digest mixtures. The geometry of the bond is compatible with both the sp3 hybridization of the C beta atom and the planarity of the imidazole ring. Two mutated variants of HPII active site residues, H128N and N201H, do not contain the His 392-Tyr 415 bond, and their crystal structures show that the imidazole ring of His 392 was rotated, in both cases, by 80 degrees relative to its position in HPII. These mutant forms of HPII are catalytically inactive and do not convert heme b to heme d, suggesting a relationship between the self-catalyzed heme conversion reaction and the formation of the His-Tyr linkage. A model coupling the two processes and involving the reaction of one molecule of H2O2 on the proximal side of the heme with compound 1 is proposed.

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Year:  1997        PMID: 9144772      PMCID: PMC2143697          DOI: 10.1002/pro.5560060507

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  15 in total

1.  Three-dimensional structure of catalase from Micrococcus lysodeikticus at 1.5 A resolution.

Authors:  G N Murshudov; W R Melik-Adamyan; A I Grebenko; V V Barynin; A A Vagin; B K Vainshtein; Z Dauter; K S Wilson
Journal:  FEBS Lett       Date:  1992-11-09       Impact factor: 4.124

2.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

3.  Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII.

Authors:  I von Ossowski; M R Mulvey; P A Leco; A Borys; P C Loewen
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

4.  Ferryl intermediates of catalase captured by time-resolved Weissenberg crystallography and UV-VIS spectroscopy.

Authors:  P Gouet; H M Jouve; P A Williams; I Andersson; P Andreoletti; L Nussaume; J Hajdu
Journal:  Nat Struct Biol       Date:  1996-11

5.  Purification and characterization of catalase HPII from Escherichia coli K12.

Authors:  P C Loewen; J Switala
Journal:  Biochem Cell Biol       Date:  1986-07       Impact factor: 3.626

6.  Cloning and physical characterization of katE and katF required for catalase HPII expression in Escherichia coli.

Authors:  M R Mulvey; P A Sorby; B L Triggs-Raine; P C Loewen
Journal:  Gene       Date:  1988-12-20       Impact factor: 3.688

7.  Wavelength mutations and posttranslational autoxidation of green fluorescent protein.

Authors:  R Heim; D C Prasher; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

8.  Three-dimensional structure of the enzyme catalase.

Authors:  B K Vainshtein; W R Melik-Adamyan; V V Barynin; A A Vagin; A I Grebenko
Journal:  Nature       Date:  1981-10-01       Impact factor: 49.962

9.  Catalase HPII of Escherichia coli catalyzes the conversion of protoheme to cis-heme d.

Authors:  P C Loewen; J Switala; I von Ossowski; A Hillar; A Christie; B Tattrie; P Nicholls
Journal:  Biochemistry       Date:  1993-09-28       Impact factor: 3.162

10.  Structure of NADH peroxidase from Streptococcus faecalis 10C1 refined at 2.16 A resolution.

Authors:  T Stehle; S A Ahmed; A Claiborne; G E Schulz
Journal:  J Mol Biol       Date:  1991-10-20       Impact factor: 5.469

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  7 in total

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2.  Formation and Reactivity of New Isoporphyrins: Implications for Understanding the Tyr-His Cross-Link Cofactor Biogenesis in Cytochrome c Oxidase.

Authors:  Melanie A Ehudin; Laura Senft; Alicja Franke; Ivana Ivanović-Burmazović; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2019-06-26       Impact factor: 15.419

3.  Role of the lateral channel in catalase HPII of Escherichia coli.

Authors:  M S Sevinc; M J Maté; J Switala; I Fita; P C Loewen
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

Review 4.  Evolution of catalases from bacteria to humans.

Authors:  Marcel Zamocky; Paul G Furtmüller; Christian Obinger
Journal:  Antioxid Redox Signal       Date:  2008-09       Impact factor: 8.401

5.  JLigand: a graphical tool for the CCP4 template-restraint library.

Authors:  Andrey A Lebedev; Paul Young; Michail N Isupov; Olga V Moroz; Alexey A Vagin; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-17

6.  The role of protein crystallography in defining the mechanisms of biogenesis and catalysis in copper amine oxidase.

Authors:  Valerie J Klema; Carrie M Wilmot
Journal:  Int J Mol Sci       Date:  2012-05-03       Impact factor: 6.208

7.  Deletion of a previously uncharacterized lipoprotein lirL confers resistance to an inhibitor of type II signal peptidase in Acinetobacter baumannii.

Authors:  Ke-Jung Huang; Homer Pantua; Jingyu Diao; Elizabeth Skippington; Michael Volny; Wendy Sandoval; Varnesh Tiku; Yutian Peng; Meredith Sagolla; Donghong Yan; Jing Kang; Anand Kumar Katakam; Nairie Michaelian; Mike Reichelt; Man-Wah Tan; Cary D Austin; Min Xu; Emily Hanan; Sharookh B Kapadia
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-13       Impact factor: 12.779

  7 in total

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