Literature DB >> 9136638

A statistical mechanical description of biomolecular hydration.

G Hummer1, A E García, D M Soumpasis.   

Abstract

An efficient and accurate theoretical description of the structural hydration of biological macromolecules is presented. The hydration of molecules of almost arbitrary size (tRNA, antibody-antigen complexes, photosynthetic reaction centre) can be studied in solution and in the crystalline environment. The biomolecular structure obtained from X-ray crystallography, NMR or modelling is required as input information. The structural arrangement of water molecules near a biomolecular surface is represented by the local water density, analogous to the corresponding electron density in an X-ray diffraction experiment. The water-density distribution is approximated in terms of two- and three-particle correlation functions of solute atoms with water using a potentials-of-mean-force expansion.

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Year:  1996        PMID: 9136638     DOI: 10.1039/fd9960300175

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  5 in total

1.  A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G.

Authors:  D Roccatano; A Amadei; A Di Nola; H J Berendsen
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Local water bridges and protein conformational stability.

Authors:  M Petukhov; D Cregut; C M Soares; L Serrano
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

3.  H-bonding in protein hydration revisited.

Authors:  Michael Petukhov; Georgy Rychkov; Leonid Firsov; Luis Serrano
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

4.  Solvent-induced free energy landscape and solute-solvent dynamic coupling in a multielement solute.

Authors:  P L San Biagio; V Martorana; D Bulone; M B Palma-Vittorelli; M U Palma
Journal:  Biophys J       Date:  2008-11-21       Impact factor: 4.033

5.  Function of the N-acetyl-L-histidine system in the vertebrate eye. Evidence in support of a role as a molecular water pump.

Authors:  M H Baslow
Journal:  J Mol Neurosci       Date:  1998-06       Impact factor: 3.444

  5 in total

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