Literature DB >> 9135113

Identification and characterization of genomic nucleosome-positioning sequences.

H R Widlund1, H Cao, S Simonsson, E Magnusson, T Simonsson, P E Nielsen, J D Kahn, D M Crothers, M Kubista.   

Abstract

Positioned nucleosomes are believed to play important roles in transcriptional regulation and for the organization of chromatin in cell nuclei. Here, we have isolated the DNA segments in the mouse genome that form the most stable nucleosomes yet characterized. In separate molecules we find phased runs of three to four adenine nucleotides, extensive CA repeats, and in a few cases phased TATA tetranucleotides. The latter forms the most stable nucleosome yet characterized. One sequence with CAG repeats was also found. By fluorescence in situ hydridization the selected sequences are shown to be localized at the centromeric regions of mouse metaphase chromosomes.

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Year:  1997        PMID: 9135113     DOI: 10.1006/jmbi.1997.0916

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  57 in total

1.  Position effects are influenced by the orientation of a transgene with respect to flanking chromatin.

Authors:  Y Q Feng; M C Lorincz; S Fiering; J M Greally; E E Bouhassira
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

2.  Global structure and mechanical properties of a 10-bp nucleosome positioning motif.

Authors:  M Roychoudhury; A Sitlani; J Lapham; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.

Authors:  C Anselmi; G Bocchinfuso; P De Santis; M Savino; A Scipioni
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

4.  Transition between two forms of heterochromatin at plant subtelomeres.

Authors:  E Sýkorová; J Fajkus; M Ito; K Fukui
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

5.  Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region.

Authors:  Meena Kanduri; Chandrasekhar Kanduri; Piero Mariano; Alexander A Vostrov; Wolfgang Quitschke; Victor Lobanenkov; Rolf Ohlsson
Journal:  Mol Cell Biol       Date:  2002-05       Impact factor: 4.272

Review 6.  Methods for the analysis of protein-chromatin interactions.

Authors:  Sarah J Brickwood; Fiona A Myers; Simon P Chandler
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

7.  Distinctive higher-order chromatin structure at mammalian centromeres.

Authors:  N Gilbert; J Allan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

8.  Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin.

Authors:  Jun-ichi Nishikawa; Miho Amano; Yoshiro Fukue; Shigeo Tanaka; Haruka Kishi; Yoshiko Hirota; Kinya Yoda; Takashi Ohyama
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

9.  RECON: a program for prediction of nucleosome formation potential.

Authors:  Victor G Levitsky
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

10.  A determining influence for CpG dinucleotides on nucleosome positioning in vitro.

Authors:  Colin S Davey; Sari Pennings; Carmel Reilly; Richard R Meehan; James Allan
Journal:  Nucleic Acids Res       Date:  2004-08-13       Impact factor: 16.971

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