Literature DB >> 9132023

Kinetic mechanism of human hypoxanthine-guanine phosphoribosyltransferase: rapid phosphoribosyl transfer chemistry.

Y Xu1, J Eads, J C Sacchettini, C Grubmeyer.   

Abstract

Hypoxanthine-guanine phosphoribosyltransferase (HGPRTase) is the locus of Lesch-Nyhan syndrome, the activator of the prodrugs 6-mercaptopurine and allopurinol, and a target for antiparasitic chemotherapy. The three-dimensional structure of the recombinant human enzyme in complex with GMP has recently been solved [Eads, J., Scapin, G., Xu, Y., Grubmeyer, C., & Sacchettini, J. C. (1994) Cell 78, 325-334]. Here, ligand binding, pre-steady state kinetics, isotope trapping, and isotope exchange experiments are presented which detail the sequential kinetic mechanism of the enzyme. In the forward reaction, in which a base (hypoxanthine or guanine) reacts with PRPP to form nucleoside monophosphate and PPi, binding of PRPP precedes that of the base, and in the reverse direction, IMP binds first. Compared to k(cat), phosphoribosyl group transfer is rapid in both the forward (131 vs 6.0 s(-1)) and reverse (9 vs 0.17 s(-1)) directions. In the forward direction, product pyrophosphate dissociates rapidly (> 12 s(-1)) followed by release of IMP (6.0 s(-1)). In the reverse direction, Hx dissociates rapidly (9.5 s(-1)) and PRPP dissociates slowly (0.24 s(-1)). The more rapid rate of utilization of guanine than hypoxanthine in the forward reaction is the result of the faster release of product GMP rather than the result of differences in the rate of the chemical step. The kinetic mechanism, with rapid chemistry and slow product dissociation, accounts for the previously observed ability of the alternative product guanine to stimulate, rather than inhibit, the pyrophosphorolysis of IMP. The overall equilibrium for the hypoxanthine phosphoribosyl transfer reaction lies far toward nucleotide product (Keq approximately 1.6 x 10(5)), at the high end for PRPP-linked nucleotide formation. The three-dimensional structure of the HGPRTase x IMP complex has been solved to 2.4 A resolution and is isomorphous with the GMP complex. The results of the ligand binding and kinetic studies are discussed in light of the structural data.

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Year:  1997        PMID: 9132023     DOI: 10.1021/bi9616007

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  tRNA-guanine transglycosylase from E. coli: a ping-pong kinetic mechanism is consistent with nucleophilic catalysis.

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2.  Acyclic immucillin phosphonates: second-generation inhibitors of Plasmodium falciparum hypoxanthine-guanine-xanthine phosphoribosyltransferase.

Authors:  Keith Z Hazleton; Meng-Chiao Ho; Maria B Cassera; Keith Clinch; Douglas R Crump; Irving Rosario; Emilio F Merino; Steve C Almo; Peter C Tyler; Vern L Schramm
Journal:  Chem Biol       Date:  2012-06-22

3.  Pyrophosphate activation in hypoxanthine--guanine phosphoribosyltransferase with transition state analogue.

Authors:  Hua Deng; Robert Callender; Vern L Schramm; Charles Grubmeyer
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

4.  Structure of Salmonella typhimurium OMP synthase in a complete substrate complex.

Authors:  Charles Grubmeyer; Michael Riis Hansen; Alexander A Fedorov; Steven C Almo
Journal:  Biochemistry       Date:  2012-05-23       Impact factor: 3.162

5.  Loop residues and catalysis in OMP synthase.

Authors:  Gary P Wang; Michael Riis Hansen; Charles Grubmeyer
Journal:  Biochemistry       Date:  2012-05-23       Impact factor: 3.162

6.  Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.

Authors:  Brent W Anderson; Kuanqing Liu; Christine Wolak; Katarzyna Dubiel; Fukang She; Kenneth A Satyshur; James L Keck; Jue D Wang
Journal:  Elife       Date:  2019-09-25       Impact factor: 8.140

7.  A mycobacterial phosphoribosyltransferase promotes bacillary survival by inhibiting oxidative stress and autophagy pathways in macrophages and zebrafish.

Authors:  Soumitra Mohanty; Lakshmanan Jagannathan; Geetanjali Ganguli; Avinash Padhi; Debasish Roy; Nader Alaridah; Pratip Saha; Upendra Nongthomba; Gabriela Godaly; Ramesh Kumar Gopal; Sulagna Banerjee; Avinash Sonawane
Journal:  J Biol Chem       Date:  2015-03-30       Impact factor: 5.157

8.  Ternary complex structure of human HGPRTase, PRPP, Mg2+, and the inhibitor HPP reveals the involvement of the flexible loop in substrate binding.

Authors:  G K Balendiran; J A Molina; Y Xu; J Torres-Martinez; R Stevens; P J Focia; A E Eakin; J C Sacchettini; S P Craig
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

9.  The catalytic and lectin domains of UDP-GalNAc:polypeptide alpha-N-Acetylgalactosaminyltransferase function in concert to direct glycosylation site selection.

Authors:  Jayalakshmi Raman; Timothy A Fritz; Thomas A Gerken; Oliver Jamison; David Live; Mian Liu; Lawrence A Tabak
Journal:  J Biol Chem       Date:  2008-06-18       Impact factor: 5.157

10.  Crystal structures of free, IMP-, and GMP-bound Escherichia coli hypoxanthine phosphoribosyltransferase.

Authors:  Luke W Guddat; Siska Vos; Jennifer L Martin; Dianne T Keough; John de Jersey
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

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