Literature DB >> 9119393

Newly identified paralogous groups on mouse chromosomes 5 and 11 reveal the age of a T-box cluster duplication.

I Ruvinsky1, L M Silver.   

Abstract

A novel family of ancient transcription factors, the T-box family, involved in embryonic development in metazoans, was described recently. Four members of this family are grouped in two tightly linked pairs within the mouse genome. This arrangement can be explained by an original cluster formation followed by an en masse duplication. Here we demonstrate that this duplication event also included several closely linked genes. Using data obtained from linked paralogous genes, we show that the T-box cluster duplication occurred prior to the divergence between bony fish and tetrapods around 400 million years ago. This work facilitates our understanding of the status of the T-box gene family in different vertebrate lineages and also defines a novel paralogy group within the mouse genome.

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Year:  1997        PMID: 9119393     DOI: 10.1006/geno.1996.4591

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  12 in total

1.  The spectrum of mutations in TBX3: Genotype/Phenotype relationship in ulnar-mammary syndrome.

Authors:  M Bamshad; T Le; W S Watkins; M E Dixon; B E Kramer; A D Roeder; J C Carey; S Root; A Schinzel; L Van Maldergem; R J Gardner; R C Lin; C E Seidman; J G Seidman; R Wallerstein; E Moran; R Sutphen; C E Campbell; L B Jorde
Journal:  Am J Hum Genet       Date:  1999-06       Impact factor: 11.025

2.  Isolation and characterization of two T-box genes from sponges, the phylogenetically oldest metazoan taxon.

Authors:  Teresa Adell; Vladislav A Grebenjuk; Matthias Wiens; Werner E G Müller
Journal:  Dev Genes Evol       Date:  2003-07-24       Impact factor: 0.900

3.  Reconciliation with non-binary species trees.

Authors:  Benjamin Vernot; Maureen Stolzer; Aiton Goldman; Dannie Durand
Journal:  J Comput Biol       Date:  2008-10       Impact factor: 1.479

4.  Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development.

Authors:  T Peters; R Dildrop; K Ausmeier; U Rüther
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

5.  Dynamic expression of Tbx2 subfamily genes in development of the mouse reproductive system.

Authors:  Nataki C Douglas; Kathleen Heng; Mark V Sauer; Virginia E Papaioannou
Journal:  Dev Dyn       Date:  2011-12-16       Impact factor: 3.780

Review 6.  TBX5: A Key Regulator of Heart Development.

Authors:  J D Steimle; I P Moskowitz
Journal:  Curr Top Dev Biol       Date:  2016-09-28       Impact factor: 4.897

7.  Transcription repression by Xenopus ET and its human ortholog TBX3, a gene involved in ulnar-mammary syndrome.

Authors:  M l He; L Wen; C E Campbell; J Y Wu; Y Rao
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

8.  Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs.

Authors:  Amy C Horton; Navin R Mahadevan; Carolina Minguillon; Kazutoyo Osoegawa; Daniel S Rokhsar; Ilya Ruvinsky; Pieter J de Jong; Malcolm P Logan; Jeremy J Gibson-Brown
Journal:  Dev Genes Evol       Date:  2008-09-25       Impact factor: 0.900

9.  Family size and turnover rates among several classes of small non-protein-coding RNA genes in Caenorhabditis nematodes.

Authors:  Paul Po-Shen Wang; Ilya Ruvinsky
Journal:  Genome Biol Evol       Date:  2012-03-30       Impact factor: 3.416

10.  Gene cluster statistics with gene families.

Authors:  Narayanan Raghupathy; Dannie Durand
Journal:  Mol Biol Evol       Date:  2009-01-15       Impact factor: 16.240

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