Literature DB >> 9108156

Processive proofreading by the adenovirus DNA polymerase. Association with the priming protein reduces exonucleolytic degradation.

A J King1, W R Teertstra, L Blanco, M Salas, P C van der Vliet.   

Abstract

By using a baculovirus expression system, the adenovirus (Ad) DNA polymerase was purified to homogeneity and shown to display a 3'-->5'exonuclease activity which is coupled to the polymerase activity. On a partial duplex structure the exonuclease activity had a marked preference for excision of a mismatched versus a matched 3'-terminus, which enables the Ad DNA polymerase to act as a proofreading enzyme. On single-stranded DNA the exonuclease action is distributive, but during replication removal of mismatched nucleotides and the switch to synthesis occurs without dissociation of the polymerase from the template. When the Ad DNA polymerase is bound to the precursor terminal protein, the rate of exonucleolysis was four times slower. Moreover, degradation could not proceed as far as with the free Ad polymerase, indicating also a qualitative difference. These results suggest a reduced proofreading capacity of the precursor terminal protein-polymerase complex, which might affect the initial stages of DNA replication.

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Substances:

Year:  1997        PMID: 9108156      PMCID: PMC146662          DOI: 10.1093/nar/25.9.1745

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  How DNA travels between the separate polymerase and 3'-5'-exonuclease sites of DNA polymerase I (Klenow fragment).

Authors:  C M Joyce
Journal:  J Biol Chem       Date:  1989-06-25       Impact factor: 5.157

2.  A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerases.

Authors:  A Bernad; L Blanco; J M Lázaro; G Martín; M Salas
Journal:  Cell       Date:  1989-10-06       Impact factor: 41.582

3.  Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3' leads to 5' exonuclease activity in deoxyribonucleic acid polymerases.

Authors:  D Brutlag; A Kornberg
Journal:  J Biol Chem       Date:  1972-01-10       Impact factor: 5.157

4.  DNA polymerase III holoenzyme of Escherichia coli. III. Distinctive processive polymerases reconstituted from purified subunits.

Authors:  S Maki; A Kornberg
Journal:  J Biol Chem       Date:  1988-05-15       Impact factor: 5.157

Review 5.  Exonucleolytic proofreading.

Authors:  T A Kunkel
Journal:  Cell       Date:  1988-06-17       Impact factor: 41.582

6.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

7.  In vitro protein-primed initiation of pneumococcal phage Cp-1 DNA replication occurs at the third 3' nucleotide of the linear template: a stepwise sliding-back mechanism.

Authors:  A C Martín; L Blanco; P García; M Salas; J Méndez
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

8.  Functional identity of proliferating cell nuclear antigen and a DNA polymerase-delta auxiliary protein.

Authors:  G Prelich; C K Tan; M Kostura; M B Mathews; A G So; K M Downey; B Stillman
Journal:  Nature       Date:  1987 Apr 2-8       Impact factor: 49.962

9.  Metal activation of synthetic and degradative activities of phi 29 DNA polymerase, a model enzyme for protein-primed DNA replication.

Authors:  J A Esteban; A Bernad; M Salas; L Blanco
Journal:  Biochemistry       Date:  1992-01-21       Impact factor: 3.162

10.  The adenovirus DNA binding protein and adenovirus DNA polymerase interact to catalyze elongation of primed DNA templates.

Authors:  J O Lindenbaum; J Field; J Hurwitz
Journal:  J Biol Chem       Date:  1986-08-05       Impact factor: 5.157

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  9 in total

1.  Cidofovir Diphosphate Inhibits Adenovirus 5 DNA Polymerase via both Nonobligate Chain Termination and Direct Inhibition, and Polymerase Mutations Confer Cidofovir Resistance on Intact Virus.

Authors:  Jeffrey M Chamberlain; Katherine Sortino; Phiroze Sethna; Andrew Bae; Randall Lanier; Robert A Bambara; Stephen Dewhurst
Journal:  Antimicrob Agents Chemother       Date:  2018-12-21       Impact factor: 5.191

2.  Recruitment of the priming protein pTP and DNA binding occur by overlapping Oct-1 POU homeodomain surfaces.

Authors:  R N de Jong; M E Mysiak; L A T Meijer; M van der Linden; P C van der Vliet
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

3.  Noncatalytic aspartate at the exonuclease domain of proofreading DNA polymerases regulates both degradative and synthetic activities.

Authors:  Alicia Del Prado; Elsa Franco-Echevarría; Beatriz González; Luis Blanco; Margarita Salas; Miguel de Vega
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

4.  The adenovirus priming protein pTP contributes to the kinetics of initiation of DNA replication.

Authors:  Monika E Mysiak; P Elly Holthuizen; Peter C van der Vliet
Journal:  Nucleic Acids Res       Date:  2004-07-25       Impact factor: 16.971

5.  Molecular architecture of adenovirus DNA polymerase and location of the protein primer.

Authors:  Arjan B Brenkman; Elise C Breure; Peter C van der Vliet
Journal:  J Virol       Date:  2002-08       Impact factor: 5.103

6.  Directed adenovirus evolution using engineered mutator viral polymerases.

Authors:  Taco G Uil; Jort Vellinga; Jeroen de Vrij; Sanne K van den Hengel; Martijn J W E Rabelink; Steve J Cramer; Julia J M Eekels; Yavuz Ariyurek; Michiel van Galen; Rob C Hoeben
Journal:  Nucleic Acids Res       Date:  2010-12-07       Impact factor: 16.971

7.  Mechanisms of Coronavirus Genome Stability As Potential Targets for Antiviral Drugs.

Authors:  S K Yuyukina; D O Zharkov
Journal:  Her Russ Acad Sci       Date:  2022-09-06       Impact factor: 0.552

8.  Functional characterization of highly processive protein-primed DNA polymerases from phages Nf and GA-1, endowed with a potent strand displacement capacity.

Authors:  Elisa Longás; Miguel de Vega; José M Lázaro; Margarita Salas
Journal:  Nucleic Acids Res       Date:  2006-10-28       Impact factor: 16.971

9.  Viral host jumps: moving toward a predictive framework.

Authors:  Juliet R C Pulliam
Journal:  Ecohealth       Date:  2008-02-13       Impact factor: 3.184

  9 in total

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