Literature DB >> 9094416

Correlated bond rotations in interactions of arginine residues with ligand carboxylate groups in protein ligand complexes.

P M Nieto1, B Birdsall, W D Morgan, T A Frenkiel, A R Gargaro, J Feeney.   

Abstract

The 1H/15N HSQC NMR spectra of complexes of Lactobacillus casei dihydrofolate reductase containing methotrexate recorded at 1 degree C show four resolved signals for the four NH(eta) protons of the Arg57 residue. This is consistent with hindered rotation in the guanidino group resulting from interactions with the alpha-carboxylate of methotrexate. Increasing the temperature causes exchange line-broadening and coalescence of signals. Rotation rates for the N(epsilon)C(zeta) and C(zeta)N(eta) bonds have been calculated from lineshape analysis and from zz-HSQC exchange experiments. The interactions between the methotrexate alpha-carboxylate group and the Arg57 guanidino group decrease the rotation rates for the N(epsilon)C(zeta) bond by about a factor of 10 and those for the C(zeta)N(eta) bonds by more than a factor of 100 with respect to their values in free arginine. Furthermore, the relative rates of rotation about these two bonds are reversed in the protein complexes compared with their values in free arginine indicating that there are concerted rotations about the N(epsilon)C(zeta) bond of the Arg57 guanidino group and the C'C(alpha) bond of the glutamate alpha-carboxylate group of methotrexate.

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Year:  1997        PMID: 9094416     DOI: 10.1016/s0014-5793(97)00147-6

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Impact of two-bond 15N-15N scalar couplings on 15N transverse relaxation measurements for arginine side chains of proteins.

Authors:  Dan Nguyen; Junji Iwahara
Journal:  J Biomol NMR       Date:  2018-05-29       Impact factor: 2.835

2.  Structure and dynamics in solution of the complex of Lactobacillus casei dihydrofolate reductase with the new lipophilic antifolate drug trimetrexate.

Authors:  V I Polshakov; B Birdsall; T A Frenkiel; A R Gargaro; J Feeney
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

Review 3.  NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics.

Authors:  Dan Nguyen; Chuanying Chen; B Montgomery Pettitt; Junji Iwahara
Journal:  Methods Enzymol       Date:  2018-09-27       Impact factor: 1.600

4.  Sensitivity improvement for correlations involving arginine side-chain Nepsilon/Hepsilon resonances in multi-dimensional NMR experiments using broadband 15N 180 degrees pulses.

Authors:  Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2006-10-12       Impact factor: 2.835

5.  Hindered Rotations of Protein Asparagine/Glutamine Side-Chain NH2 Groups: Impact of Hydrogen Bonding with DNA.

Authors:  Xi Wang; Binhan Yu; Junji Iwahara
Journal:  J Phys Chem Lett       Date:  2021-11-16       Impact factor: 6.475

6.  Conformational and dynamic properties of a 14 residue antifreeze glycopeptide from Antarctic cod.

Authors:  A N Lane; L M Hays; R E Feeney; L M Crowe; J H Crowe
Journal:  Protein Sci       Date:  1998-07       Impact factor: 6.725

Review 7.  Physicochemical Properties of Ion Pairs of Biological Macromolecules.

Authors:  Junji Iwahara; Alexandre Esadze; Levani Zandarashvili
Journal:  Biomolecules       Date:  2015-09-30

8.  Determining rotational dynamics of the guanidino group of arginine side chains in proteins by carbon-detected NMR.

Authors:  Karola Gerecht; Angelo Miguel Figueiredo; D Flemming Hansen
Journal:  Chem Commun (Camb)       Date:  2017-08-25       Impact factor: 6.222

9.  A 13C-detected 15N double-quantum NMR experiment to probe arginine side-chain guanidinium 15Nη chemical shifts.

Authors:  Harold W Mackenzie; D Flemming Hansen
Journal:  J Biomol NMR       Date:  2017-11-10       Impact factor: 2.835

  9 in total

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