Literature DB >> 9094326

Entropy in protein folding and in protein-protein interactions.

G P Brady1, K A Sharp.   

Abstract

The reduction of conformational entropy is a major barrier that has to be overcome in protein folding and binding. Changes in solvent entropy are also a major factor. Recent advances include clarification of the fundamental issues concerning the separation of entropy into components, the treatment of association entropy in binding, and the role of size and shape effects in solvation entropy. Advances in the application of entropy calculations include an emerging consensus for estimates of backbone and sidechain entropy loss in protein folding via use of numerically intensive methods for sampling, and use of the expanding protein-structure database.

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Year:  1997        PMID: 9094326     DOI: 10.1016/s0959-440x(97)80028-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  48 in total

1.  Optimal region of average side-chain entropy for fast protein folding.

Authors:  O V Galzitskaya; A K Surin; H Nakamura
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

2.  Fast prediction and visualization of protein binding pockets with PASS.

Authors:  G P Brady; P F Stouten
Journal:  J Comput Aided Mol Des       Date:  2000-05       Impact factor: 3.686

3.  Contribution of translational and rotational motions to molecular association in aqueous solution.

Authors:  Y B Yu; P L Privalov; R S Hodges
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  Conversion of monomeric protein L to an obligate dimer by computational protein design.

Authors:  B Kuhlman; J W O'Neill; D E Kim; K Y Zhang; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

5.  Thermodynamics and kinetics of actin filament nucleation.

Authors:  D Sept; J A McCammon
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

6.  Association entropy in adsorption processes.

Authors:  N Ben-Tal; B Honig; C K Bagdassarian; A Ben-Shaul
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

7.  Low free energy cost of very long loop insertions in proteins.

Authors:  Michelle Scalley-Kim; Philippe Minard; David Baker
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

8.  Side-chain conformational entropy at protein-protein interfaces.

Authors:  Christian Cole; Jim Warwicker
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

9.  Energetic and entropic contributions to the interactions between like-charged groups in cationic peptides: A molecular dynamics simulation study.

Authors:  Marcos Villarreal; Guillermo Montich
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

10.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

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